miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 142011 0.66 0.897069
Target:  5'- gCGUGGGGcGGguGUGGCAccACguGGguGCa -3'
miRNA:   3'- aGUACCUC-CUguCGCCGU--UG--UCguCG- -5'
29370 5' -55 NC_006151.1 + 141673 0.74 0.495694
Target:  5'- gUUGUGGAGGcaugucugccucccACGGCGGCuGGCGGCGGa -3'
miRNA:   3'- -AGUACCUCC--------------UGUCGCCG-UUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 141620 0.68 0.853059
Target:  5'- gCcgGGAucGGGCGggucgcugccGCGGCGGC-GCGGCg -3'
miRNA:   3'- aGuaCCU--CCUGU----------CGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 141373 0.68 0.819486
Target:  5'- ---aGuAGGACGGgGGCGggccccgggcaaACAGCGGCg -3'
miRNA:   3'- aguaCcUCCUGUCgCCGU------------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 141247 0.67 0.893041
Target:  5'- cCAcGGAGGGCGaggagauccagucgcGgGGCcuCGGCGGCu -3'
miRNA:   3'- aGUaCCUCCUGU---------------CgCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 139678 0.8 0.249084
Target:  5'- aCA-GGcccuGcGGCAGCGGCGGCGGCAGCa -3'
miRNA:   3'- aGUaCCu---C-CUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 139505 1.13 0.00159
Target:  5'- gUCAUGGAGGACAGCGGCAACAGCAGCg -3'
miRNA:   3'- -AGUACCUCCUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 138174 0.66 0.90359
Target:  5'- uUCGUGGcGGACguGGCcauGGCGcccguGCuGCGGCa -3'
miRNA:   3'- -AGUACCuCCUG--UCG---CCGU-----UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 137905 0.7 0.70414
Target:  5'- cCAaGGucGACGGCGGCGGCuGCcacgGGCg -3'
miRNA:   3'- aGUaCCucCUGUCGCCGUUGuCG----UCG- -5'
29370 5' -55 NC_006151.1 + 135083 0.74 0.498637
Target:  5'- cUCggGcGGGGGCGGCggggccgggcgGGCGGCGGUAGCg -3'
miRNA:   3'- -AGuaC-CUCCUGUCG-----------CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 135010 0.72 0.641992
Target:  5'- ---cGGGGGcGCGG-GGgGGCAGCAGCg -3'
miRNA:   3'- aguaCCUCC-UGUCgCCgUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 134819 0.71 0.693885
Target:  5'- ---cGGAcccGGACGGUGGCGACcGCGcGCg -3'
miRNA:   3'- aguaCCU---CCUGUCGCCGUUGuCGU-CG- -5'
29370 5' -55 NC_006151.1 + 134241 0.69 0.764001
Target:  5'- aUCGUGGAcgcGGGCuuucGCGGCGAgGuGCAGg -3'
miRNA:   3'- -AGUACCU---CCUGu---CGCCGUUgU-CGUCg -5'
29370 5' -55 NC_006151.1 + 134098 0.72 0.600274
Target:  5'- cCGUGGAcGGAgGGCGGCuGCuGguGUg -3'
miRNA:   3'- aGUACCU-CCUgUCGCCGuUGuCguCG- -5'
29370 5' -55 NC_006151.1 + 133891 0.69 0.773608
Target:  5'- cCGUGGgcugauccaccGGGACuccccuGGCGGCGcaGGCGGCg -3'
miRNA:   3'- aGUACC-----------UCCUG------UCGCCGUugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 133621 0.73 0.558943
Target:  5'- gUC-UGGGGGucGCGGCGGCcGgGGCGGUg -3'
miRNA:   3'- -AGuACCUCC--UGUCGCCGuUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 133370 0.71 0.652422
Target:  5'- -gGUGGuGGugGugGCGGCcggGGCGGCGGCc -3'
miRNA:   3'- agUACCuCCugU--CGCCG---UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 133137 0.68 0.853059
Target:  5'- uUCAUGucccaGAGGGacuCGGCGGCGGC-GCGGg -3'
miRNA:   3'- -AGUAC-----CUCCU---GUCGCCGUUGuCGUCg -5'
29370 5' -55 NC_006151.1 + 132149 0.72 0.589886
Target:  5'- -gGUGGuuGACGGCGcGCAGCugcGCGGCc -3'
miRNA:   3'- agUACCucCUGUCGC-CGUUGu--CGUCG- -5'
29370 5' -55 NC_006151.1 + 132030 0.72 0.589886
Target:  5'- ---cGaGAGGuagcCGGCGGCGcGCGGCAGCg -3'
miRNA:   3'- aguaC-CUCCu---GUCGCCGU-UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.