Results 61 - 80 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 5' | -55 | NC_006151.1 | + | 58042 | 0.66 | 0.909867 |
Target: 5'- aCA-GGGGGAagccCAGCGcGCAGUAGUAGUc -3' miRNA: 3'- aGUaCCUCCU----GUCGC-CGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 33313 | 0.66 | 0.909867 |
Target: 5'- gCGUGGgaccgggaccGGGACAgGgGGCGGgGGCGGg -3' miRNA: 3'- aGUACC----------UCCUGU-CgCCGUUgUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 4766 | 0.66 | 0.902948 |
Target: 5'- cUCcgGGAugaagacGGGCAcgggcccggccGCGGCG-CGGUAGCg -3' miRNA: 3'- -AGuaCCU-------CCUGU-----------CGCCGUuGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 142011 | 0.66 | 0.897069 |
Target: 5'- gCGUGGGGcGGguGUGGCAccACguGGguGCa -3' miRNA: 3'- aGUACCUC-CUguCGCCGU--UG--UCguCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 69043 | 0.66 | 0.897069 |
Target: 5'- -gGUGGcGucaaagaccGGCAGCGGCGGCuccucgucccccAGCGGCa -3' miRNA: 3'- agUACCuC---------CUGUCGCCGUUG------------UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 131837 | 0.66 | 0.896404 |
Target: 5'- cCGUGGugaugagcGGGGCGGCcgagacgcgcgccGGCGGCgucgggucgcagGGCAGCa -3' miRNA: 3'- aGUACC--------UCCUGUCG-------------CCGUUG------------UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 141247 | 0.67 | 0.893041 |
Target: 5'- cCAcGGAGGGCGaggagauccagucgcGgGGCcuCGGCGGCu -3' miRNA: 3'- aGUaCCUCCUGU---------------CgCCGuuGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 17400 | 0.67 | 0.890308 |
Target: 5'- -----cGGGGCGcGUGGCGcGCGGCAGCa -3' miRNA: 3'- aguaccUCCUGU-CGCCGU-UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 90453 | 0.67 | 0.890308 |
Target: 5'- gCAgcgGGuGGACucgAGCGcGCAGCGcCAGCa -3' miRNA: 3'- aGUa--CCuCCUG---UCGC-CGUUGUcGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 90397 | 0.67 | 0.890308 |
Target: 5'- ---gGGAcGGACAGCaugcaGGCGGCgAGgAGCg -3' miRNA: 3'- aguaCCU-CCUGUCG-----CCGUUG-UCgUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 88303 | 0.66 | 0.90359 |
Target: 5'- aCGUGGGGGcGCAG-GGCcuCGGagaAGCg -3' miRNA: 3'- aGUACCUCC-UGUCgCCGuuGUCg--UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 138174 | 0.66 | 0.90359 |
Target: 5'- uUCGUGGcGGACguGGCcauGGCGcccguGCuGCGGCa -3' miRNA: 3'- -AGUACCuCCUG--UCG---CCGU-----UGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 23692 | 0.66 | 0.909867 |
Target: 5'- ---cGGAGGGCA-UGGCGuccccGgGGCAGCc -3' miRNA: 3'- aguaCCUCCUGUcGCCGU-----UgUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 103835 | 0.66 | 0.90925 |
Target: 5'- cCGUGGAgaugcucGGGCGGCuGCG-CGcGCAGCc -3' miRNA: 3'- aGUACCU-------CCUGUCGcCGUuGU-CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 64387 | 0.66 | 0.90359 |
Target: 5'- cCGUGGccaGCccGCGGC-GCAGCAGCg -3' miRNA: 3'- aGUACCuccUGu-CGCCGuUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 62495 | 0.66 | 0.90359 |
Target: 5'- aCGUGGAcaaGGC-GCGGaCGACGGCccGGCg -3' miRNA: 3'- aGUACCUc--CUGuCGCC-GUUGUCG--UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 105274 | 0.66 | 0.90359 |
Target: 5'- ---gGGAGGACuuugGGCGcGCGcGCGGCcGCg -3' miRNA: 3'- aguaCCUCCUG----UCGC-CGU-UGUCGuCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 103337 | 0.66 | 0.90359 |
Target: 5'- --cUGGuGca-GGCGGC-GCAGCAGCg -3' miRNA: 3'- aguACCuCcugUCGCCGuUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 48729 | 0.66 | 0.90359 |
Target: 5'- ---cGaAGGGCAcgcccGCGGCGuCGGCGGCa -3' miRNA: 3'- aguaCcUCCUGU-----CGCCGUuGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 15804 | 0.66 | 0.90359 |
Target: 5'- ---gGGAGGACGGgGGggaaGACGGCGa- -3' miRNA: 3'- aguaCCUCCUGUCgCCg---UUGUCGUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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