miRNA display CGI


Results 61 - 80 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 141841 0.66 0.600982
Target:  5'- cCGCGcucgacGCGAGgG-GCUCGC-GCCGCGc -3'
miRNA:   3'- -GCGC------CGCUCgCaCGAGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 29972 0.66 0.600982
Target:  5'- cCGCGGCGAugGUGaauggGCcCGCgGCCugGa -3'
miRNA:   3'- -GCGCCGCU--CGCa----CGaGCGgCGGugCc -5'
29371 3' -62.9 NC_006151.1 + 38868 0.66 0.600982
Target:  5'- cCGCGGCccuccgaGGCGgccCUCGCCGCCuACu- -3'
miRNA:   3'- -GCGCCGc------UCGCac-GAGCGGCGG-UGcc -5'
29371 3' -62.9 NC_006151.1 + 104021 0.66 0.600015
Target:  5'- gCGCGGCggaggugGAGCGcGCgcagCGCCaGCuCugGGc -3'
miRNA:   3'- -GCGCCG-------CUCGCaCGa---GCGG-CG-GugCC- -5'
29371 3' -62.9 NC_006151.1 + 18434 0.66 0.598083
Target:  5'- cCGcCGGCGGGCGUcGCccgccuccucgucgUCGUCGUCGCc- -3'
miRNA:   3'- -GC-GCCGCUCGCA-CG--------------AGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 132124 0.66 0.591328
Target:  5'- aGCGGCaGGCccaGCUCGC-GCCgGCGGu -3'
miRNA:   3'- gCGCCGcUCGca-CGAGCGgCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 5008 0.66 0.591328
Target:  5'- gCGCGGgggcCGGGCGgGCUCcgggGCCggggccggggagGCCGCGGc -3'
miRNA:   3'- -GCGCC----GCUCGCaCGAG----CGG------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 25268 0.66 0.591328
Target:  5'- gGUGcGCGAGUugGUGUgugUGCUugGCCGCGGg -3'
miRNA:   3'- gCGC-CGCUCG--CACGa--GCGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 127455 0.66 0.591328
Target:  5'- gGCGGCGcacgaAGCGcuggGCggCGCggaacgaGCCGCGGa -3'
miRNA:   3'- gCGCCGC-----UCGCa---CGa-GCGg------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 128267 0.66 0.591328
Target:  5'- aGCGGCacuGCGcGCgcagCGCCGCgCGCaGGu -3'
miRNA:   3'- gCGCCGcu-CGCaCGa---GCGGCG-GUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 104863 0.66 0.591328
Target:  5'- cCGCGGCGAcggaGCGcGCcacgCGCCuGCUGCGc -3'
miRNA:   3'- -GCGCCGCU----CGCaCGa---GCGG-CGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 118153 0.66 0.591328
Target:  5'- cCGCGGCG-GUGg---CGCCGCUggugcGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCacgaGCGGCGG-----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 17982 0.66 0.590364
Target:  5'- aCGCGGCGcaggaacucgcugGGCGU-CUCGuuGUCGCu- -3'
miRNA:   3'- -GCGCCGC-------------UCGCAcGAGCggCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 11825 0.67 0.581701
Target:  5'- gGCGGCG-GCG-GCUCGCC-CUcCGu -3'
miRNA:   3'- gCGCCGCuCGCaCGAGCGGcGGuGCc -5'
29371 3' -62.9 NC_006151.1 + 91743 0.67 0.581701
Target:  5'- uCGCGGCGGGCGagcggGCUCGg-GCgGgCGGu -3'
miRNA:   3'- -GCGCCGCUCGCa----CGAGCggCGgU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 99214 0.67 0.581701
Target:  5'- gGCGGUGcaggccAGCGc-CUCGCCGCUGCaGGu -3'
miRNA:   3'- gCGCCGC------UCGCacGAGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 133160 0.67 0.581701
Target:  5'- gGCGGCGcgGGCGUGggcCUCGgCCacgcgucCCACGGc -3'
miRNA:   3'- gCGCCGC--UCGCAC---GAGC-GGc------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 74731 0.67 0.581701
Target:  5'- gGCGGCGuuguGCGUGUUgCGCCaguaGCUcUGGa -3'
miRNA:   3'- gCGCCGCu---CGCACGA-GCGG----CGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 103345 0.67 0.581701
Target:  5'- gGCGGCGcAGCa-GCgCGCCGCCGa-- -3'
miRNA:   3'- gCGCCGC-UCGcaCGaGCGGCGGUgcc -5'
29371 3' -62.9 NC_006151.1 + 105676 0.67 0.572107
Target:  5'- aCGCGGCcuacGGCGgcgcgggGCcgaCGCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGc---UCGCa------CGa--GCGGCgGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.