miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 122688 0.66 0.620345
Target:  5'- gCGCGGCGGcCGUggaGCUCGC-GCUcuuCGGg -3'
miRNA:   3'- -GCGCCGCUcGCA---CGAGCGgCGGu--GCC- -5'
29371 3' -62.9 NC_006151.1 + 36641 0.66 0.619375
Target:  5'- gGCGGCG-GCG-GCgcccccucCGCCGgaggggaCCGCGGu -3'
miRNA:   3'- gCGCCGCuCGCaCGa-------GCGGC-------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 66590 0.66 0.610656
Target:  5'- gCGCGGcCGAgGCGcucgacUUCGCCGCCuacgACGGc -3'
miRNA:   3'- -GCGCC-GCU-CGCac----GAGCGGCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 100070 0.66 0.610656
Target:  5'- gCGCGGCcgccGAG-GUGCUCGaggCGCCGgcgcCGGc -3'
miRNA:   3'- -GCGCCG----CUCgCACGAGCg--GCGGU----GCC- -5'
29371 3' -62.9 NC_006151.1 + 81902 0.66 0.610656
Target:  5'- gCGCGcCGGucGCG-GCgCGCCGCCuCGGa -3'
miRNA:   3'- -GCGCcGCU--CGCaCGaGCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 71780 0.66 0.610656
Target:  5'- aGCGGCG-GCGgggGCU-GCCGCaccaGCuGGc -3'
miRNA:   3'- gCGCCGCuCGCa--CGAgCGGCGg---UG-CC- -5'
29371 3' -62.9 NC_006151.1 + 92728 0.66 0.610656
Target:  5'- aCGUGGUG-GCcaUGCUcaCGCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGCuCGc-ACGA--GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 95208 0.66 0.610656
Target:  5'- uGCccaGCGAGCG-GCUgCGCCGCaCGCc- -3'
miRNA:   3'- gCGc--CGCUCGCaCGA-GCGGCG-GUGcc -5'
29371 3' -62.9 NC_006151.1 + 121994 0.66 0.610656
Target:  5'- gGCGGC--GCGUGC-CGCUuCCACGc -3'
miRNA:   3'- gCGCCGcuCGCACGaGCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 128809 0.66 0.610656
Target:  5'- gCGCGGCGcGCGUGg-CcCCGUaCGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCACgaGcGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 21104 0.66 0.610656
Target:  5'- cCGCGGgGAGCcggGUcacgUCGCgCGCCACc- -3'
miRNA:   3'- -GCGCCgCUCGca-CG----AGCG-GCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 102006 0.66 0.610656
Target:  5'- cCGCGcacccGCGAGCccauggGCuUCGCCGUC-CGGg -3'
miRNA:   3'- -GCGC-----CGCUCGca----CG-AGCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 99630 0.66 0.609688
Target:  5'- cCGCGcGCGAGgcccucaacaCGUgGCUCGCCuuccgcgcgcagaGCCGCuGGg -3'
miRNA:   3'- -GCGC-CGCUC----------GCA-CGAGCGG-------------CGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 57237 0.66 0.600982
Target:  5'- gGCGGCGcGCGcgGcCUCGgCGuCCGCGcGg -3'
miRNA:   3'- gCGCCGCuCGCa-C-GAGCgGC-GGUGC-C- -5'
29371 3' -62.9 NC_006151.1 + 95125 0.66 0.600982
Target:  5'- gGCGGCGuugaGGCGccg-CGCCGCCGgguCGGc -3'
miRNA:   3'- gCGCCGC----UCGCacgaGCGGCGGU---GCC- -5'
29371 3' -62.9 NC_006151.1 + 105229 0.66 0.600982
Target:  5'- uGCGGC-AGCG-GCUgacgGCCGCCGaGGu -3'
miRNA:   3'- gCGCCGcUCGCaCGAg---CGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 123243 0.66 0.600982
Target:  5'- -aCGGCGcGCGUucuGCgagGCCGCCGCGc -3'
miRNA:   3'- gcGCCGCuCGCA---CGag-CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 141841 0.66 0.600982
Target:  5'- cCGCGcucgacGCGAGgG-GCUCGC-GCCGCGc -3'
miRNA:   3'- -GCGC------CGCUCgCaCGAGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 29972 0.66 0.600982
Target:  5'- cCGCGGCGAugGUGaauggGCcCGCgGCCugGa -3'
miRNA:   3'- -GCGCCGCU--CGCa----CGaGCGgCGGugCc -5'
29371 3' -62.9 NC_006151.1 + 55397 0.66 0.600982
Target:  5'- uGCGGCGccuGCGcgagcaggcccUGCgCGCCGCgCagGCGGg -3'
miRNA:   3'- gCGCCGCu--CGC-----------ACGaGCGGCG-G--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.