miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 23034 0.68 0.488074
Target:  5'- gGCGGCGAagaaGCGgGCg-GCCGCgGCGa -3'
miRNA:   3'- gCGCCGCU----CGCaCGagCGGCGgUGCc -5'
29371 3' -62.9 NC_006151.1 + 23882 0.67 0.534164
Target:  5'- gGgGGCGAGCGgguucacggGCUgggCGUCGgUCGCGGg -3'
miRNA:   3'- gCgCCGCUCGCa--------CGA---GCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 24499 0.68 0.515522
Target:  5'- -cCGGCGAGCccguaaaaguUGggCGCCGCCACGu -3'
miRNA:   3'- gcGCCGCUCGc---------ACgaGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 25268 0.66 0.591328
Target:  5'- gGUGcGCGAGUugGUGUgugUGCUugGCCGCGGg -3'
miRNA:   3'- gCGC-CGCUCG--CACGa--GCGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 25387 0.71 0.35541
Target:  5'- gGCGGCG-GUGguuCUCGaCCGCgACGGg -3'
miRNA:   3'- gCGCCGCuCGCac-GAGC-GGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 26349 0.68 0.49715
Target:  5'- aCGgGGCG-GCG-GCggGCCGCguCGGg -3'
miRNA:   3'- -GCgCCGCuCGCaCGagCGGCGguGCC- -5'
29371 3' -62.9 NC_006151.1 + 27088 0.69 0.443942
Target:  5'- gCGCGGCGcagGGCGcGCgugUCGcCCGUCACGu -3'
miRNA:   3'- -GCGCCGC---UCGCaCG---AGC-GGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 28181 0.74 0.223098
Target:  5'- gGCGGCGAGUGccgucgGCcggGCCGCCACGc -3'
miRNA:   3'- gCGCCGCUCGCa-----CGag-CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 29039 0.71 0.363686
Target:  5'- aCGCuGGC-AGCGUGCcaagacucgaguuggCGgCGCCGCGGg -3'
miRNA:   3'- -GCG-CCGcUCGCACGa--------------GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 29142 0.67 0.534164
Target:  5'- uCGCGG-GAGCGcGCgugacCCGCCGCGa -3'
miRNA:   3'- -GCGCCgCUCGCaCGagc--GGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 29589 0.72 0.292758
Target:  5'- uCGCGGCGGcuGCG-GC-CGCgGCgGCGGg -3'
miRNA:   3'- -GCGCCGCU--CGCaCGaGCGgCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 29972 0.66 0.600982
Target:  5'- cCGCGGCGAugGUGaauggGCcCGCgGCCugGa -3'
miRNA:   3'- -GCGCCGCU--CGCa----CGaGCGgCGGugCc -5'
29371 3' -62.9 NC_006151.1 + 30616 0.69 0.418563
Target:  5'- gGCGGUcGGCGUGCgCGCUG-UGCGGg -3'
miRNA:   3'- gCGCCGcUCGCACGaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 30893 0.73 0.255992
Target:  5'- gGCGGCGAGCGgaGCgCGCgguagCGCCcGCGGg -3'
miRNA:   3'- gCGCCGCUCGCa-CGaGCG-----GCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 31245 0.66 0.630042
Target:  5'- gGCGaGCGAGCGgGCggGCgaGCCGgGGc -3'
miRNA:   3'- gCGC-CGCUCGCaCGagCGg-CGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 31589 0.71 0.362928
Target:  5'- gGCGGCGcGCuccgcGCUccccCGCCGCCugGGc -3'
miRNA:   3'- gCGCCGCuCGca---CGA----GCGGCGGugCC- -5'
29371 3' -62.9 NC_006151.1 + 31767 0.75 0.208039
Target:  5'- gGCGGCGGGCGcgcgccgggcgGCUcuccuccuucacCGCCGCCGCGu -3'
miRNA:   3'- gCGCCGCUCGCa----------CGA------------GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 31969 0.77 0.135078
Target:  5'- aCGCGG-GA-CGUGCcCGCCGCCugGGa -3'
miRNA:   3'- -GCGCCgCUcGCACGaGCGGCGGugCC- -5'
29371 3' -62.9 NC_006151.1 + 32245 0.68 0.488074
Target:  5'- cCGCGGCGAcc--GC-CGCCGCCGCu- -3'
miRNA:   3'- -GCGCCGCUcgcaCGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 33039 0.68 0.479077
Target:  5'- aCGaCGGgGAGgGggGgaUGCUGCCGCGGg -3'
miRNA:   3'- -GC-GCCgCUCgCa-CgaGCGGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.