miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 8985 0.66 0.630042
Target:  5'- --gGGuCGGGCGaugGC-CGCCGCCACc- -3'
miRNA:   3'- gcgCC-GCUCGCa--CGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 10013 0.75 0.203218
Target:  5'- aGCGGCG-GCG-GCg-GUCGCCGCGGc -3'
miRNA:   3'- gCGCCGCuCGCaCGagCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 10199 0.68 0.49715
Target:  5'- uCGCGGCGcgGGCGgcgGCUgcagagGCgGCUGCGGa -3'
miRNA:   3'- -GCGCCGC--UCGCa--CGAg-----CGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 10467 0.67 0.551141
Target:  5'- aCGCGGCG-GCG-GUgaaggaggagaGCCGCC-CGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGag---------CGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 10620 0.7 0.402142
Target:  5'- cCGCGcGCccGCGUGCgcucgUGCCGgCGCGGc -3'
miRNA:   3'- -GCGC-CGcuCGCACGa----GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 10664 0.66 0.63974
Target:  5'- gGCGGCGGGgGaGCgcggagcgCGCCGCCc--- -3'
miRNA:   3'- gCGCCGCUCgCaCGa-------GCGGCGGugcc -5'
29371 3' -62.9 NC_006151.1 + 11329 0.67 0.572107
Target:  5'- cCGC-GCGGGCGauaccgcGCggGCCGCCcGCGGg -3'
miRNA:   3'- -GCGcCGCUCGCa------CGagCGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 11825 0.67 0.581701
Target:  5'- gGCGGCG-GCG-GCUCGCC-CUcCGu -3'
miRNA:   3'- gCGCCGCuCGCaCGAGCGGcGGuGCc -5'
29371 3' -62.9 NC_006151.1 + 13943 0.68 0.479077
Target:  5'- gGgGGCGGGCGccccgggGacgCGCCGgCCAUGGg -3'
miRNA:   3'- gCgCCGCUCGCa------Cga-GCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 17473 0.69 0.435385
Target:  5'- cCGCGGCGuguccucgucGGCG-GCgCGCCGCUGCu- -3'
miRNA:   3'- -GCGCCGC----------UCGCaCGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 17982 0.66 0.590364
Target:  5'- aCGCGGCGcaggaacucgcugGGCGU-CUCGuuGUCGCu- -3'
miRNA:   3'- -GCGCCGC-------------UCGCAcGAGCggCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 18434 0.66 0.598083
Target:  5'- cCGcCGGCGGGCGUcGCccgccuccucgucgUCGUCGUCGCc- -3'
miRNA:   3'- -GC-GCCGCUCGCA-CG--------------AGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 18702 0.7 0.394086
Target:  5'- gGCGGCGccGGCGUcGUgaCGCCGuCCACGu -3'
miRNA:   3'- gCGCCGC--UCGCA-CGa-GCGGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 19259 0.69 0.461333
Target:  5'- gCGUGGa-AGCGggGCUCGUgGCgCGCGGg -3'
miRNA:   3'- -GCGCCgcUCGCa-CGAGCGgCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 19301 0.67 0.543574
Target:  5'- aGCGGCGcgGGCGgccGgUCGCCcaccGCCACa- -3'
miRNA:   3'- gCGCCGC--UCGCa--CgAGCGG----CGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 19431 0.68 0.49715
Target:  5'- cCGgGGUGAcgauggGCG-GCUCGCgcuggaGCCGCGGc -3'
miRNA:   3'- -GCgCCGCU------CGCaCGAGCGg-----CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 19739 0.66 0.63974
Target:  5'- gCGCGGCGGuCGUcGCcguugaggUCGCCGUCGaGGu -3'
miRNA:   3'- -GCGCCGCUcGCA-CG--------AGCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 20779 0.76 0.154817
Target:  5'- gCGCcgGGCGAGCG-GCUCGCgcuugcgcagacaGCCGCGGa -3'
miRNA:   3'- -GCG--CCGCUCGCaCGAGCGg------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 21104 0.66 0.610656
Target:  5'- cCGCGGgGAGCcggGUcacgUCGCgCGCCACc- -3'
miRNA:   3'- -GCGCCgCUCGca-CG----AGCG-GCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 21334 0.66 0.627132
Target:  5'- gCGCGGCGGGgGUccgcggcuggaacgGCUcCGCgGgCUGCGGc -3'
miRNA:   3'- -GCGCCGCUCgCA--------------CGA-GCGgC-GGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.