miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 137407 0.76 0.160146
Target:  5'- cCGcCGGgGGGCGcccucGC-CGCCGCCGCGGg -3'
miRNA:   3'- -GC-GCCgCUCGCa----CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 57983 0.76 0.166437
Target:  5'- gGCGGCGAGCGcgccGCggaccgccuccggCGCgGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGCa---CGa------------GCGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 45176 0.76 0.176291
Target:  5'- aCGgGGUG-GCGUGCcCGCCaCCACGGa -3'
miRNA:   3'- -GCgCCGCuCGCACGaGCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 99138 0.75 0.184894
Target:  5'- cCGgGGCGcaGGcCGUGCacguggcCGCCGCCGCGGa -3'
miRNA:   3'- -GCgCCGC--UC-GCACGa------GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 57515 0.75 0.189334
Target:  5'- cCGCGGCG-GCGgcgGC-CGCCuccggcgcgGCCGCGGg -3'
miRNA:   3'- -GCGCCGCuCGCa--CGaGCGG---------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 69433 0.75 0.192953
Target:  5'- gGCGGCGccgccgccguucGCGUcCUCGCgCGCCGCGGg -3'
miRNA:   3'- gCGCCGCu-----------CGCAcGAGCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 81514 0.75 0.198495
Target:  5'- gCGCGGCccGCGUgaGCUCgGCgGCCGCGGc -3'
miRNA:   3'- -GCGCCGcuCGCA--CGAG-CGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 37763 0.75 0.198495
Target:  5'- aCGCGGUGAGCGccgugGCcaugagcCGCCGCUACGa -3'
miRNA:   3'- -GCGCCGCUCGCa----CGa------GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 10013 0.75 0.203218
Target:  5'- aGCGGCG-GCG-GCg-GUCGCCGCGGc -3'
miRNA:   3'- gCGCCGCuCGCaCGagCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 88460 0.75 0.208039
Target:  5'- uGCGGCGccCGaGCUCGUCGgCCACGGu -3'
miRNA:   3'- gCGCCGCucGCaCGAGCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 78169 0.75 0.208039
Target:  5'- cCGUGGuCGAGgcCGUGUcCGCCGUCGCGGc -3'
miRNA:   3'- -GCGCC-GCUC--GCACGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104908 0.75 0.208039
Target:  5'- aCGCGGCG-GCG-GCgcgCGaCCGCgACGGg -3'
miRNA:   3'- -GCGCCGCuCGCaCGa--GC-GGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 31767 0.75 0.208039
Target:  5'- gGCGGCGGGCGcgcgccgggcgGCUcuccuccuucacCGCCGCCGCGu -3'
miRNA:   3'- gCGCCGCUCGCa----------CGA------------GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 138723 0.75 0.208039
Target:  5'- cCGCGcGCGGGuCGUGUaCGCgCGCCGCGa -3'
miRNA:   3'- -GCGC-CGCUC-GCACGaGCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 59425 0.74 0.212462
Target:  5'- aGCGGCGccagcucGGCGUcggccGC-CGCCGCCGCGa -3'
miRNA:   3'- gCGCCGC-------UCGCA-----CGaGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 87429 0.74 0.212959
Target:  5'- aGcCGGUGGcCGUGCccgcCGCCGCCGCGGc -3'
miRNA:   3'- gC-GCCGCUcGCACGa---GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 40565 0.74 0.217978
Target:  5'- aGCGGCG-GCG-GCg-GCCGCgGCGGa -3'
miRNA:   3'- gCGCCGCuCGCaCGagCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 138603 0.74 0.217978
Target:  5'- aCGCGGCGcugccgcucGGCGaGgaCGCCGCCGgGGg -3'
miRNA:   3'- -GCGCCGC---------UCGCaCgaGCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 104273 0.74 0.223098
Target:  5'- gCGCGGCG-GCGgGCcCGCCGCUGCaGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGaGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 28181 0.74 0.223098
Target:  5'- gGCGGCGAGUGccgucgGCcggGCCGCCACGc -3'
miRNA:   3'- gCGCCGCUCGCa-----CGag-CGGCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.