miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 138908 1.09 0.000725
Target:  5'- aCGCGGCGAGCGUGCUCGCCGCCACGGu -3'
miRNA:   3'- -GCGCCGCUCGCACGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 93440 0.87 0.02719
Target:  5'- gGgGGCGAGCGggGgUCGCCGCCGCGGg -3'
miRNA:   3'- gCgCCGCUCGCa-CgAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 103683 0.85 0.039088
Target:  5'- gCGCGGCGGGgGUGCUgcgCGCCGCCGUGGa -3'
miRNA:   3'- -GCGCCGCUCgCACGA---GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 68779 0.82 0.060512
Target:  5'- gCGCGGCGAG-GUGC--GCCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCUCgCACGagCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 64506 0.8 0.08633
Target:  5'- gGCGGCGGGCGcGCgccgccaaagGCCGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGCaCGag--------CGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104822 0.79 0.102897
Target:  5'- gGCGGCGcGCGacgGcCUCGCCGCgGCGGa -3'
miRNA:   3'- gCGCCGCuCGCa--C-GAGCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 50621 0.79 0.108155
Target:  5'- cCGCGGC-AGCGUGCaCGCCucggcgacgGCCGCGGg -3'
miRNA:   3'- -GCGCCGcUCGCACGaGCGG---------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 39160 0.78 0.122122
Target:  5'- cCGCGGCGgccucucGGCGcUGCUCGCCGCCuuCGc -3'
miRNA:   3'- -GCGCCGC-------UCGC-ACGAGCGGCGGu-GCc -5'
29371 3' -62.9 NC_006151.1 + 117624 0.78 0.128607
Target:  5'- uCGCGcGCGAGCGUGCccacgUGCaCGCCGCGc -3'
miRNA:   3'- -GCGC-CGCUCGCACGa----GCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 97289 0.78 0.128607
Target:  5'- gGCGGCGGGCGUGUUgaGCCGgCCcguCGGg -3'
miRNA:   3'- gCGCCGCUCGCACGAg-CGGC-GGu--GCC- -5'
29371 3' -62.9 NC_006151.1 + 99732 0.77 0.134747
Target:  5'- gCGCGGCGcuCGUcgaccucGC-CGCCGCCGCGGa -3'
miRNA:   3'- -GCGCCGCucGCA-------CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 31969 0.77 0.135078
Target:  5'- aCGCGG-GA-CGUGCcCGCCGCCugGGa -3'
miRNA:   3'- -GCGCCgCUcGCACGaGCGGCGGugCC- -5'
29371 3' -62.9 NC_006151.1 + 107091 0.77 0.137412
Target:  5'- gGCGGUGucgcGCGUGCUCugggcgccgcccgaGCCGCCGCGa -3'
miRNA:   3'- gCGCCGCu---CGCACGAG--------------CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 77297 0.77 0.145347
Target:  5'- cCGCGcCGcGUGUGCcCGCCGCCAUGGa -3'
miRNA:   3'- -GCGCcGCuCGCACGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 52388 0.77 0.145347
Target:  5'- cCGCGG-GGGCG-GCgggCGCCGCCGCGc -3'
miRNA:   3'- -GCGCCgCUCGCaCGa--GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 104402 0.77 0.145347
Target:  5'- uCGcCGGCG-GCGUGCUggcccgCGCCGCCGcCGGc -3'
miRNA:   3'- -GC-GCCGCuCGCACGA------GCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 50655 0.77 0.149287
Target:  5'- gGCGGaccCGAGuCGUGCgcggccgcacccccgCGCCGCCGCGGc -3'
miRNA:   3'- gCGCC---GCUC-GCACGa--------------GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122398 0.77 0.152583
Target:  5'- gCGCGcGCuGGCGgcGCUCGCCGCCGUGGa -3'
miRNA:   3'- -GCGC-CGcUCGCa-CGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 20779 0.76 0.154817
Target:  5'- gCGCcgGGCGAGCG-GCUCGCgcuugcgcagacaGCCGCGGa -3'
miRNA:   3'- -GCG--CCGCUCGCaCGAGCGg------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 3090 0.76 0.156323
Target:  5'- gGCGGCGAGCa-GCgccgagagGCCGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGcaCGag------CGGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.