miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 135917 0.72 0.319486
Target:  5'- -cCGGCGGuCGUGCgcgCGCUcuGCCGCGGg -3'
miRNA:   3'- gcGCCGCUcGCACGa--GCGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 135883 0.73 0.255992
Target:  5'- cCGCGuGCGGccCGUGUucgUCGCCGCCGCGa -3'
miRNA:   3'- -GCGC-CGCUc-GCACG---AGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 135533 0.66 0.620345
Target:  5'- gGCGGCGAGCGggGCggggaggaucaCGuuGagCACGGc -3'
miRNA:   3'- gCGCCGCUCGCa-CGa----------GCggCg-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 135166 0.72 0.299272
Target:  5'- gCGCGGCccggacGGGCGccgGCU-GCCGCCGcCGGg -3'
miRNA:   3'- -GCGCCG------CUCGCa--CGAgCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 134258 0.72 0.278197
Target:  5'- uCGCGGCGAG-GUGCaggCgauuguagccccggGCCGCCcACGGg -3'
miRNA:   3'- -GCGCCGCUCgCACGa--G--------------CGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 134174 0.67 0.563505
Target:  5'- gGUGGCGcugcccaccggauacGCGaUGCUCGUCGCgcagCGCGGg -3'
miRNA:   3'- gCGCCGCu--------------CGC-ACGAGCGGCG----GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 133630 0.68 0.482666
Target:  5'- uCGCGGCGGccggggcggugguccGgGUGCgagaggCGCUGCCggcGCGGc -3'
miRNA:   3'- -GCGCCGCU---------------CgCACGa-----GCGGCGG---UGCC- -5'
29371 3' -62.9 NC_006151.1 + 133332 0.66 0.63974
Target:  5'- gCGCGcCGGGCGgccgGUUcCGCgGCgGCGGu -3'
miRNA:   3'- -GCGCcGCUCGCa---CGA-GCGgCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 133160 0.67 0.581701
Target:  5'- gGCGGCGcgGGCGUGggcCUCGgCCacgcgucCCACGGc -3'
miRNA:   3'- gCGCCGC--UCGCAC---GAGC-GGc------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 133105 0.69 0.452592
Target:  5'- aGCGGuCGAGCGccGCgucCGUCGUCGgGGg -3'
miRNA:   3'- gCGCC-GCUCGCa-CGa--GCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 132124 0.66 0.591328
Target:  5'- aGCGGCaGGCccaGCUCGC-GCCgGCGGu -3'
miRNA:   3'- gCGCCGcUCGca-CGAGCGgCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 131739 0.71 0.340706
Target:  5'- gGUGGCGGGCccggGCgaggCGaCCGUCGCGGu -3'
miRNA:   3'- gCGCCGCUCGca--CGa---GC-GGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 131446 0.68 0.524812
Target:  5'- gGCGGCGGGCGgaaGUccgggCGCCGCaccucgccCACGa -3'
miRNA:   3'- gCGCCGCUCGCa--CGa----GCGGCG--------GUGCc -5'
29371 3' -62.9 NC_006151.1 + 131120 0.7 0.394086
Target:  5'- cCGCGGCGcGgGagGCcgCGgCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCuCgCa-CGa-GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 131006 0.71 0.326447
Target:  5'- gGCGGUaGAGCGUGC-CGgCGUaGCGGg -3'
miRNA:   3'- gCGCCG-CUCGCACGaGCgGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 130945 0.68 0.506301
Target:  5'- gGCGGCGGGgG-GUcgCGCgGgCGCGGg -3'
miRNA:   3'- gCGCCGCUCgCaCGa-GCGgCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 130887 0.72 0.319486
Target:  5'- gGCGGCGguggaGGCGgcgGCcgUCGCCGUCGuCGGu -3'
miRNA:   3'- gCGCCGC-----UCGCa--CG--AGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 130628 0.68 0.524812
Target:  5'- uCGCGGCucacGAGCGccGCcgagGCCGCCuGCGGc -3'
miRNA:   3'- -GCGCCG----CUCGCa-CGag--CGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 130556 0.68 0.515522
Target:  5'- gGCGGCGcGC-UGC-CGCC-CCACGa -3'
miRNA:   3'- gCGCCGCuCGcACGaGCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 130350 0.72 0.305898
Target:  5'- cCGCGGCGucGUGguugacgGCcgCGCgCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCu-CGCa------CGa-GCG-GCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.