miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 141841 0.66 0.600982
Target:  5'- cCGCGcucgacGCGAGgG-GCUCGC-GCCGCGc -3'
miRNA:   3'- -GCGC------CGCUCgCaCGAGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 141642 0.72 0.305898
Target:  5'- cCGCGGCGGcGCG-GCgggGCC-CCGCGGg -3'
miRNA:   3'- -GCGCCGCU-CGCaCGag-CGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 141402 0.67 0.553038
Target:  5'- aGCGGCGuGUccggcgaucgGUGCgggCGCgGCC-CGGc -3'
miRNA:   3'- gCGCCGCuCG----------CACGa--GCGgCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 140282 0.69 0.426925
Target:  5'- cCGuCGaCGAGCucGUGCgccggCGCCGCCuGCGGg -3'
miRNA:   3'- -GC-GCcGCUCG--CACGa----GCGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 140067 0.67 0.543574
Target:  5'- gGCGGCGcGCGUGCUCcgcgagaugguGCUccugaacgaggGCCugACGGa -3'
miRNA:   3'- gCGCCGCuCGCACGAG-----------CGG-----------CGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 139907 0.66 0.620345
Target:  5'- aCGaCGGCuuccgcgccGCGgGCUCGUCGCCGUGGg -3'
miRNA:   3'- -GC-GCCGcu-------CGCaCGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 139657 0.73 0.244606
Target:  5'- uCGCGGCGGGCGcGC-CGCCcgacagGCCcuGCGGc -3'
miRNA:   3'- -GCGCCGCUCGCaCGaGCGG------CGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 139605 0.69 0.443082
Target:  5'- aGCGGCGgcccguccgGGCGcgGCUgggggccauccggCGCCGgCGCGGg -3'
miRNA:   3'- gCGCCGC---------UCGCa-CGA-------------GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 139306 0.67 0.543574
Target:  5'- uGCGGCGcGUGcUGCUCGaCCGUgcuCGcCGGg -3'
miRNA:   3'- gCGCCGCuCGC-ACGAGC-GGCG---GU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 138908 1.09 0.000725
Target:  5'- aCGCGGCGAGCGUGCUCGCCGCCACGGu -3'
miRNA:   3'- -GCGCCGCUCGCACGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 138723 0.75 0.208039
Target:  5'- cCGCGcGCGGGuCGUGUaCGCgCGCCGCGa -3'
miRNA:   3'- -GCGC-CGCUC-GCACGaGCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 138603 0.74 0.217978
Target:  5'- aCGCGGCGcugccgcucGGCGaGgaCGCCGCCGgGGg -3'
miRNA:   3'- -GCGCCGC---------UCGCaCgaGCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 137762 0.68 0.506301
Target:  5'- cCGCGGCcuggcgcGCGUGCUCcagcaggccguGCUGCUggaGCGGg -3'
miRNA:   3'- -GCGCCGcu-----CGCACGAG-----------CGGCGG---UGCC- -5'
29371 3' -62.9 NC_006151.1 + 137664 0.69 0.434535
Target:  5'- gGCGGaCGAGCGcccgccgUGCg-GCUGCCGCGc -3'
miRNA:   3'- gCGCC-GCUCGC-------ACGagCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 137407 0.76 0.160146
Target:  5'- cCGcCGGgGGGCGcccucGC-CGCCGCCGCGGg -3'
miRNA:   3'- -GC-GCCgCUCGCa----CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 137178 0.69 0.435385
Target:  5'- gGCGGCGcAGauguaCGUGa--GCCGCCACGa -3'
miRNA:   3'- gCGCCGC-UC-----GCACgagCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 136993 0.71 0.333521
Target:  5'- gGCGGCGGGCGcGCgCGCaCGgCGCuGGg -3'
miRNA:   3'- gCGCCGCUCGCaCGaGCG-GCgGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 136638 0.69 0.418563
Target:  5'- cCGCGGCGcccGUGgggcGCUCGCC-CCuCGGg -3'
miRNA:   3'- -GCGCCGCu--CGCa---CGAGCGGcGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 136428 0.68 0.488074
Target:  5'- cCGCGGCG-GCGcacGC-CGCgCGCUACGu -3'
miRNA:   3'- -GCGCCGCuCGCa--CGaGCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 135954 0.68 0.515522
Target:  5'- uCGCGGCGcgGGaCGUcCUCGagGCCAUGGa -3'
miRNA:   3'- -GCGCCGC--UC-GCAcGAGCggCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.