Results 41 - 60 of 363 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 105885 | 0.66 | 0.63974 |
Target: 5'- gCGCGGUcGGCGacaaGCUgGCgGCCAUGc -3' miRNA: 3'- -GCGCCGcUCGCa---CGAgCGgCGGUGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 19739 | 0.66 | 0.63974 |
Target: 5'- gCGCGGCGGuCGUcGCcguugaggUCGCCGUCGaGGu -3' miRNA: 3'- -GCGCCGCUcGCA-CG--------AGCGGCGGUgCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 54088 | 0.66 | 0.63974 |
Target: 5'- uGCGGCG-GCG-GCg-GCgGCCAUGu -3' miRNA: 3'- gCGCCGCuCGCaCGagCGgCGGUGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 95021 | 0.66 | 0.63974 |
Target: 5'- cCGCGcGCGuAGCGgcugUGCUCGaaGCCGuCGa -3' miRNA: 3'- -GCGC-CGC-UCGC----ACGAGCggCGGU-GCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 85484 | 0.66 | 0.63974 |
Target: 5'- -uCGGCGAggacGCGccGCUgcUGCgCGCCACGGu -3' miRNA: 3'- gcGCCGCU----CGCa-CGA--GCG-GCGGUGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 133332 | 0.66 | 0.63974 |
Target: 5'- gCGCGcCGGGCGgccgGUUcCGCgGCgGCGGu -3' miRNA: 3'- -GCGCcGCUCGCa---CGA-GCGgCGgUGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 58323 | 0.66 | 0.637801 |
Target: 5'- aGCGGCGGcgcgccggccuccGCGUaggcgcgcgcgaaGCUgGuCCGCCGCGu -3' miRNA: 3'- gCGCCGCU-------------CGCA-------------CGAgC-GGCGGUGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 78472 | 0.66 | 0.627132 |
Target: 5'- -uCGGCGAGgugaugcggaugcuCGUGaaCGCCGCCGUGGu -3' miRNA: 3'- gcGCCGCUC--------------GCACgaGCGGCGGUGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 94231 | 0.66 | 0.629072 |
Target: 5'- aGCGGUagaacucGAGCucggGCUCGCUGagCGCGGc -3' miRNA: 3'- gCGCCG-------CUCGca--CGAGCGGCg-GUGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 90728 | 0.66 | 0.629072 |
Target: 5'- gGCGGCGAcggugGCG-GCggCGCCcucggggGCgGCGGg -3' miRNA: 3'- gCGCCGCU-----CGCaCGa-GCGG-------CGgUGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 127842 | 0.66 | 0.629072 |
Target: 5'- gGCGGCGucGCG-GCUgcgccggagggggCGCCGCC-CGc -3' miRNA: 3'- gCGCCGCu-CGCaCGA-------------GCGGCGGuGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 8985 | 0.66 | 0.630042 |
Target: 5'- --gGGuCGGGCGaugGC-CGCCGCCACc- -3' miRNA: 3'- gcgCC-GCUCGCa--CGaGCGGCGGUGcc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 31245 | 0.66 | 0.630042 |
Target: 5'- gGCGaGCGAGCGgGCggGCgaGCCGgGGc -3' miRNA: 3'- gCGC-CGCUCGCaCGagCGg-CGGUgCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 52464 | 0.66 | 0.630042 |
Target: 5'- gGCGGCcaGGCGccgguagGC-CGCCGUgACGGc -3' miRNA: 3'- gCGCCGc-UCGCa------CGaGCGGCGgUGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 56564 | 0.66 | 0.630042 |
Target: 5'- uGCcgGGCGA-CGcGC-CGCCGCCcgACGGg -3' miRNA: 3'- gCG--CCGCUcGCaCGaGCGGCGG--UGCC- -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 76701 | 0.66 | 0.630042 |
Target: 5'- aGUGGCGcgGGCGcGC-CGCgGCCGCc- -3' miRNA: 3'- gCGCCGC--UCGCaCGaGCGgCGGUGcc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 104783 | 0.66 | 0.630042 |
Target: 5'- aCGCGGagccauGcGCGcGCUCGUgCGCCGCGa -3' miRNA: 3'- -GCGCCg-----CuCGCaCGAGCG-GCGGUGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 113288 | 0.66 | 0.630042 |
Target: 5'- cCGCGGCGuacGCGcGCUacCGCgcgguggaCGCCACGc -3' miRNA: 3'- -GCGCCGCu--CGCaCGA--GCG--------GCGGUGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 115065 | 0.66 | 0.630042 |
Target: 5'- -cCGGgGGGCGgcugaGCUCgGCCGUCAUGa -3' miRNA: 3'- gcGCCgCUCGCa----CGAG-CGGCGGUGCc -5' |
|||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 53895 | 0.66 | 0.631012 |
Target: 5'- aCGCGGCGAagggcagcuccaGCGccucuauauccaccgGgUUGuCCGCCGCGGc -3' miRNA: 3'- -GCGCCGCU------------CGCa--------------CgAGC-GGCGGUGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home