miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 5' -53.8 NC_006151.1 + 101420 0.66 0.939946
Target:  5'- cGCAGC-GCGCCGAGUccuUCaCgCUGGUc -3'
miRNA:   3'- aCGUCGaUGUGGUUCA---AGcG-GACCAu -5'
29371 5' -53.8 NC_006151.1 + 53024 0.66 0.939946
Target:  5'- -cCAGCc-CugCAGGUUCGCCgGGUu -3'
miRNA:   3'- acGUCGauGugGUUCAAGCGGaCCAu -5'
29371 5' -53.8 NC_006151.1 + 24738 0.66 0.934926
Target:  5'- gUGCGGCaGgACCAGGcacgUCGCCgGGc- -3'
miRNA:   3'- -ACGUCGaUgUGGUUCa---AGCGGaCCau -5'
29371 5' -53.8 NC_006151.1 + 91304 0.66 0.933891
Target:  5'- aGCAGCcGCGCCGGGaaggCGCCguacaccucgaaGGUGa -3'
miRNA:   3'- aCGUCGaUGUGGUUCaa--GCGGa-----------CCAU- -5'
29371 5' -53.8 NC_006151.1 + 94399 0.66 0.929647
Target:  5'- gGCAGCUcguGCagACCAGGUcccCGCC-GGUGa -3'
miRNA:   3'- aCGUCGA---UG--UGGUUCAa--GCGGaCCAU- -5'
29371 5' -53.8 NC_006151.1 + 50227 0.66 0.928013
Target:  5'- gUGCGGCUGCACCGGGacaacguguuugcggCGCCa---- -3'
miRNA:   3'- -ACGUCGAUGUGGUUCaa-------------GCGGaccau -5'
29371 5' -53.8 NC_006151.1 + 84336 0.66 0.92411
Target:  5'- cGCGGCcuCGCCGAGUacgUCGCCggcccgcggcGGUGa -3'
miRNA:   3'- aCGUCGauGUGGUUCA---AGCGGa---------CCAU- -5'
29371 5' -53.8 NC_006151.1 + 3276 0.66 0.92411
Target:  5'- cGCGGCgaugUGCGCCAGGgcgGCCgGGUc -3'
miRNA:   3'- aCGUCG----AUGUGGUUCaagCGGaCCAu -5'
29371 5' -53.8 NC_006151.1 + 118137 0.67 0.912258
Target:  5'- cGCAGCgccgacgACGCCGcggcGGUggCGCCgcUGGUGc -3'
miRNA:   3'- aCGUCGa------UGUGGU----UCAa-GCGG--ACCAU- -5'
29371 5' -53.8 NC_006151.1 + 95217 0.67 0.910391
Target:  5'- aGCGGCUGCGCCGcacgcccucgaccgAGg-CGCCcgucgGGUAg -3'
miRNA:   3'- aCGUCGAUGUGGU--------------UCaaGCGGa----CCAU- -5'
29371 5' -53.8 NC_006151.1 + 106763 0.67 0.905946
Target:  5'- aGCAGCgcgACGCgCGuGagCGCCUGGa- -3'
miRNA:   3'- aCGUCGa--UGUG-GUuCaaGCGGACCau -5'
29371 5' -53.8 NC_006151.1 + 106633 0.67 0.892563
Target:  5'- cGCGGU--CACCGAG--CGCCUGGa- -3'
miRNA:   3'- aCGUCGauGUGGUUCaaGCGGACCau -5'
29371 5' -53.8 NC_006151.1 + 120104 0.67 0.885499
Target:  5'- cGguGCUGCGCCGc---CGCgUGGUGg -3'
miRNA:   3'- aCguCGAUGUGGUucaaGCGgACCAU- -5'
29371 5' -53.8 NC_006151.1 + 2453 0.68 0.870647
Target:  5'- cGCAGCgggGCGCCGagcccccagcGGUUgGCCgcgcGGUGc -3'
miRNA:   3'- aCGUCGa--UGUGGU----------UCAAgCGGa---CCAU- -5'
29371 5' -53.8 NC_006151.1 + 48938 0.68 0.843299
Target:  5'- aGguGCUGC-CCGcgcgcgaggacguGUUCGCCUGGa- -3'
miRNA:   3'- aCguCGAUGuGGUu------------CAAGCGGACCau -5'
29371 5' -53.8 NC_006151.1 + 81395 0.69 0.82075
Target:  5'- cGCGGC-GC-CCAGGUUgGCCagGGUGg -3'
miRNA:   3'- aCGUCGaUGuGGUUCAAgCGGa-CCAU- -5'
29371 5' -53.8 NC_006151.1 + 137102 0.7 0.774004
Target:  5'- cGguGCUG-GCCGGGgaCGCCUGGg- -3'
miRNA:   3'- aCguCGAUgUGGUUCaaGCGGACCau -5'
29371 5' -53.8 NC_006151.1 + 81940 0.7 0.774004
Target:  5'- gGCGGCcACGCCGAGgcgcacCGCCgcgcGGUAa -3'
miRNA:   3'- aCGUCGaUGUGGUUCaa----GCGGa---CCAU- -5'
29371 5' -53.8 NC_006151.1 + 72745 0.7 0.75826
Target:  5'- cGCAGCaGCGCCGAG-UCGCUggcgcacagcggcgGGUAc -3'
miRNA:   3'- aCGUCGaUGUGGUUCaAGCGGa-------------CCAU- -5'
29371 5' -53.8 NC_006151.1 + 127850 0.7 0.754274
Target:  5'- cGCGGCUGCGCCGgagGGggCGCCg---- -3'
miRNA:   3'- aCGUCGAUGUGGU---UCaaGCGGaccau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.