miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 3' -54.5 NC_006151.1 + 75854 0.66 0.949285
Target:  5'- cCCGucGAcgGGGCgccccugcgugUCCGCGUGggucaUGCGCGc -3'
miRNA:   3'- -GGUu-CUa-CCCGa----------AGGCGCAC-----ACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 111304 0.66 0.944925
Target:  5'- cCCAcGAacgcGGCggCCGCGUGcccggGCACGg -3'
miRNA:   3'- -GGUuCUac--CCGaaGGCGCACa----CGUGC- -5'
29373 3' -54.5 NC_006151.1 + 77374 0.66 0.944475
Target:  5'- gCCGacGGcgGGGa--CCGCGcguacuuUGUGCACGg -3'
miRNA:   3'- -GGU--UCuaCCCgaaGGCGC-------ACACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 113680 0.66 0.940326
Target:  5'- gCCGAGAaccGCUUCgaggggCGCGUGUGCGgGg -3'
miRNA:   3'- -GGUUCUaccCGAAG------GCGCACACGUgC- -5'
29373 3' -54.5 NC_006151.1 + 115428 0.66 0.940326
Target:  5'- --uGGggGGGCggaagaggUCgCGCGUGaUGCGCGc -3'
miRNA:   3'- gguUCuaCCCGa-------AG-GCGCAC-ACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 75427 0.66 0.935486
Target:  5'- cCCGGcGUGGGCgcgaagcugCCgGCGUG-GCGCGc -3'
miRNA:   3'- -GGUUcUACCCGaa-------GG-CGCACaCGUGC- -5'
29373 3' -54.5 NC_006151.1 + 99494 0.66 0.935486
Target:  5'- cCCGAGAaGGGCguggagCaCGUG-GUGCGCc -3'
miRNA:   3'- -GGUUCUaCCCGaa----G-GCGCaCACGUGc -5'
29373 3' -54.5 NC_006151.1 + 3255 0.66 0.935486
Target:  5'- gCgGAGcgGGGCg-CCGCG-GcGCGCGg -3'
miRNA:   3'- -GgUUCuaCCCGaaGGCGCaCaCGUGC- -5'
29373 3' -54.5 NC_006151.1 + 10936 0.66 0.930404
Target:  5'- gCCgAGGGUGGGCgcgcgugUCCGUGUGagaGUuuACGg -3'
miRNA:   3'- -GG-UUCUACCCGa------AGGCGCACa--CG--UGC- -5'
29373 3' -54.5 NC_006151.1 + 117584 0.67 0.925079
Target:  5'- -gAGGAUGGGC---CGCGUG-GCGCc -3'
miRNA:   3'- ggUUCUACCCGaagGCGCACaCGUGc -5'
29373 3' -54.5 NC_006151.1 + 117117 0.67 0.925079
Target:  5'- aCCAGGccGGcGCacaccgUCuCGCGgagGUGCGCGa -3'
miRNA:   3'- -GGUUCuaCC-CGa-----AG-GCGCa--CACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 89465 0.67 0.919511
Target:  5'- aCCAGca-GGGC--CCGCGUcacGUGCGCGg -3'
miRNA:   3'- -GGUUcuaCCCGaaGGCGCA---CACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 8501 0.67 0.9137
Target:  5'- gCGGGGaGGGUgucgUCUGUGUgucuGUGCGCGg -3'
miRNA:   3'- gGUUCUaCCCGa---AGGCGCA----CACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 67869 0.67 0.9137
Target:  5'- gCCGAGGUGGcGCgcgcgccagcCCGCGgg-GCACa -3'
miRNA:   3'- -GGUUCUACC-CGaa--------GGCGCacaCGUGc -5'
29373 3' -54.5 NC_006151.1 + 25202 0.68 0.89483
Target:  5'- cCCAAGAUGGGCguggccUCgGCGgagcCGCGa -3'
miRNA:   3'- -GGUUCUACCCGa-----AGgCGCacacGUGC- -5'
29373 3' -54.5 NC_006151.1 + 665 0.69 0.832932
Target:  5'- gCCGGGgcGGGC-UCCGCGgaucgcaucgGCGCGc -3'
miRNA:   3'- -GGUUCuaCCCGaAGGCGCaca-------CGUGC- -5'
29373 3' -54.5 NC_006151.1 + 60209 0.69 0.826164
Target:  5'- -gAAGAUGGGCUcgCCGCGc--GCGCc -3'
miRNA:   3'- ggUUCUACCCGAa-GGCGCacaCGUGc -5'
29373 3' -54.5 NC_006151.1 + 7298 0.69 0.817542
Target:  5'- cUCAcGGUGcaaGCUUCCGUGUGUcuGCACGu -3'
miRNA:   3'- -GGUuCUACc--CGAAGGCGCACA--CGUGC- -5'
29373 3' -54.5 NC_006151.1 + 15431 0.7 0.790685
Target:  5'- uCCGAGuuuaGCUUCCGCGgcucgGUGUGCGa -3'
miRNA:   3'- -GGUUCuaccCGAAGGCGCa----CACGUGC- -5'
29373 3' -54.5 NC_006151.1 + 134236 0.71 0.762522
Target:  5'- aCGGGAUcguggacgcGGGCUUUCGCGgcgagGUGCAgGc -3'
miRNA:   3'- gGUUCUA---------CCCGAAGGCGCa----CACGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.