miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 120335 0.7 0.311609
Target:  5'- -aCGCCGcGCGCGcccgcGUGGCCgggcucgcgGGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGC-----CACCGG---------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 19638 0.7 0.318424
Target:  5'- cGUCGCCGcGCGCgucgagGGUGaaGuuGGCGCCc -3'
miRNA:   3'- -CAGCGGCaUGCG------CCAC--CggCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 89260 0.7 0.318424
Target:  5'- -gCGCCGU-CGUGGUcGaCGGCGCCGc -3'
miRNA:   3'- caGCGGCAuGCGCCAcCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 74869 0.7 0.318424
Target:  5'- -gCGCCGcgcacCGCGGccaccgUGGCCGGgGCCa -3'
miRNA:   3'- caGCGGCau---GCGCC------ACCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 84353 0.7 0.318424
Target:  5'- cGUCGCCGgccCGCGGcGGUgaucgcgaucgCGGCGCgCGg -3'
miRNA:   3'- -CAGCGGCau-GCGCCaCCG-----------GCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 62085 0.7 0.318424
Target:  5'- cGUCGUCcucgGCGCGGUcGGCCugGGCGCgGc -3'
miRNA:   3'- -CAGCGGca--UGCGCCA-CCGG--CCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 75107 0.7 0.325349
Target:  5'- cGUUGCCGgGCGCcagcagcuggucGGcGGCCGGCGgCGc -3'
miRNA:   3'- -CAGCGGCaUGCG------------CCaCCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 81867 0.7 0.332386
Target:  5'- cGUCGCUcucgacGCGCaGGaGcGCCGGCGCCGa -3'
miRNA:   3'- -CAGCGGca----UGCG-CCaC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 127255 0.7 0.332386
Target:  5'- -gCGgCGcgacGCGCGGUGGCCGGUgagGUCGa -3'
miRNA:   3'- caGCgGCa---UGCGCCACCGGCCG---CGGC- -5'
29373 5' -64.1 NC_006151.1 + 101426 0.7 0.332386
Target:  5'- -gCGCCGaguccuucACGCuggucGUGGUCGGCGCCGu -3'
miRNA:   3'- caGCGGCa-------UGCGc----CACCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 18469 0.7 0.335232
Target:  5'- cGUCGCCGUcguaguaguccucguGCGUGGgcaGGCUGGUGUa- -3'
miRNA:   3'- -CAGCGGCA---------------UGCGCCa--CCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 10904 0.7 0.339534
Target:  5'- -gUGCCG-GCGCGGaccggggucgGGCCcacGGCGCCGa -3'
miRNA:   3'- caGCGGCaUGCGCCa---------CCGG---CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 52017 0.7 0.339534
Target:  5'- -gCGCCGcGCcagcuccucgGCGaaGGCCGGCGCCGu -3'
miRNA:   3'- caGCGGCaUG----------CGCcaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73813 0.7 0.339534
Target:  5'- cGUCGCgCaugGCGCcgaGGUGGUCGGCGCa- -3'
miRNA:   3'- -CAGCG-Gca-UGCG---CCACCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 81344 0.7 0.346794
Target:  5'- cGUCGCCGccgccGCGCccgGGgccccGGCgGGCGCCa -3'
miRNA:   3'- -CAGCGGCa----UGCG---CCa----CCGgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 119745 0.7 0.346794
Target:  5'- -cCGCCGUggACcggcucugGCGGacgUGGCCGGCGCgCGc -3'
miRNA:   3'- caGCGGCA--UG--------CGCC---ACCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 118766 0.7 0.346794
Target:  5'- -aCGCgCGUgcggaaccuggACGCGGUGGCgcgCGGCGCgGc -3'
miRNA:   3'- caGCG-GCA-----------UGCGCCACCG---GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 4869 0.7 0.346794
Target:  5'- -cCGCCGUagcggACGCGGccgucGGCCGGagggucggaGCCGg -3'
miRNA:   3'- caGCGGCA-----UGCGCCa----CCGGCCg--------CGGC- -5'
29373 5' -64.1 NC_006151.1 + 129004 0.7 0.346794
Target:  5'- -cCGCCGUgaugcccuucaGCGCGGcgucGGCCGcGCGCgCGu -3'
miRNA:   3'- caGCGGCA-----------UGCGCCa---CCGGC-CGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 5015 0.7 0.346794
Target:  5'- --gGCCGg--GCGGgcuccggGGCCGGgGCCGg -3'
miRNA:   3'- cagCGGCaugCGCCa------CCGGCCgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.