miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 4606 0.72 0.26108
Target:  5'- cGUgGCCGUgggGCGC-GUGGacCCGGCGCUGg -3'
miRNA:   3'- -CAgCGGCA---UGCGcCACC--GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75642 0.72 0.26108
Target:  5'- cUUGCCGU-CGuCGGgGGCCGGCucGCCGc -3'
miRNA:   3'- cAGCGGCAuGC-GCCaCCGGCCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 96213 0.72 0.266414
Target:  5'- cGUCGCCGUG-GCGGcGGCCgcggcgaGGCGCa- -3'
miRNA:   3'- -CAGCGGCAUgCGCCaCCGG-------CCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 58651 0.72 0.267012
Target:  5'- -gCGCCGggaggGCGCGGcgcagGGCCGccaugaccGCGCCGu -3'
miRNA:   3'- caGCGGCa----UGCGCCa----CCGGC--------CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 113596 0.72 0.267012
Target:  5'- -cCcCUGUGCGCcGUGGCCGaGCGCCa -3'
miRNA:   3'- caGcGGCAUGCGcCACCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 104267 0.72 0.267012
Target:  5'- -aCGCCG-GCGCGGcGGCgGGCccGCCGc -3'
miRNA:   3'- caGCGGCaUGCGCCaCCGgCCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 82952 0.72 0.269416
Target:  5'- gGUCGCCGUACGCGGacuccgucaccuccaU-GCCGcGCGUCu -3'
miRNA:   3'- -CAGCGGCAUGCGCC---------------AcCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 3717 0.71 0.273054
Target:  5'- -gCGCCGcucggGCGCuGGguccgGGCCGGCGgCGg -3'
miRNA:   3'- caGCGGCa----UGCG-CCa----CCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 100062 0.71 0.273054
Target:  5'- --gGUCGUGCGCgcggccgccgaGGUGcucgaggcGCCGGCGCCGg -3'
miRNA:   3'- cagCGGCAUGCG-----------CCAC--------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 100229 0.71 0.273054
Target:  5'- -gCGCCGUggccgagcGCGUGGUGGCgcuCGaGCGCCu -3'
miRNA:   3'- caGCGGCA--------UGCGCCACCG---GC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 17335 0.71 0.279204
Target:  5'- cGUCaGCuCGUGCGUcucGGUGGUgauguagaaCGGCGCCGu -3'
miRNA:   3'- -CAG-CG-GCAUGCG---CCACCG---------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 101770 0.71 0.279204
Target:  5'- -cCGCCG-ACGCGG-GGCCccGGgGCCa -3'
miRNA:   3'- caGCGGCaUGCGCCaCCGG--CCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 39318 0.71 0.284833
Target:  5'- -gCGCCGUGgaguaccucugcuCGCGGcucggcgcGGCgCGGCGCCGg -3'
miRNA:   3'- caGCGGCAU-------------GCGCCa-------CCG-GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 63781 0.71 0.291834
Target:  5'- cGUCGCCagGCGgGGUcGGCCGuCGCCa -3'
miRNA:   3'- -CAGCGGcaUGCgCCA-CCGGCcGCGGc -5'
29373 5' -64.1 NC_006151.1 + 55006 0.71 0.291834
Target:  5'- cUCGUCGgGCGCaagcccgccgagGGgcacccGGCCGGCGCCGu -3'
miRNA:   3'- cAGCGGCaUGCG------------CCa-----CCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 123902 0.71 0.291834
Target:  5'- -cCGCCGUgcgGCGCGGcGGCCGuGaCGCgGg -3'
miRNA:   3'- caGCGGCA---UGCGCCaCCGGC-C-GCGgC- -5'
29373 5' -64.1 NC_006151.1 + 11145 0.71 0.297662
Target:  5'- aUCGCCGc-UGCGGUuuccccuGGCgCGGCGCCu -3'
miRNA:   3'- cAGCGGCauGCGCCA-------CCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 36117 0.71 0.304906
Target:  5'- -cCGCCGUccuCGCGGccgcGGCCGGaGCCa -3'
miRNA:   3'- caGCGGCAu--GCGCCa---CCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 58140 0.71 0.304906
Target:  5'- -gCGCCGUACGC---GGCCGcGUGCCa -3'
miRNA:   3'- caGCGGCAUGCGccaCCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 100655 0.71 0.304906
Target:  5'- -gCGCCGUcgacgaGCGCGGcGuGCUGGCGCuCGu -3'
miRNA:   3'- caGCGGCA------UGCGCCaC-CGGCCGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.