miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 31759 0.66 0.550869
Target:  5'- -gCGCC-UGCgGCGGcGGgCGcGCGCCGg -3'
miRNA:   3'- caGCGGcAUG-CGCCaCCgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 36117 0.71 0.304906
Target:  5'- -cCGCCGUccuCGCGGccgcGGCCGGaGCCa -3'
miRNA:   3'- caGCGGCAu--GCGCCa---CCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 36519 0.7 0.354163
Target:  5'- --gGCCGgcgGCGCGGccucGGaccCCGGCGCCa -3'
miRNA:   3'- cagCGGCa--UGCGCCa---CC---GGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 36558 0.72 0.243926
Target:  5'- --aGCCagcaGCGGUGGCCGcaGCGCCGg -3'
miRNA:   3'- cagCGGcaugCGCCACCGGC--CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 36866 0.65 0.578469
Target:  5'- cUCGCCGgggACgGCGGggcgcccccGcagagacagccccGCCGGCGCCGc -3'
miRNA:   3'- cAGCGGCa--UG-CGCCa--------C-------------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 38382 0.69 0.376927
Target:  5'- -gCGCCGgcgccgGCGGcGGCgGGCGCCc -3'
miRNA:   3'- caGCGGCaug---CGCCaCCGgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 38889 0.68 0.45956
Target:  5'- cUCGCCGccUACuGCccgcccgaGGUGGCCcGCGCCu -3'
miRNA:   3'- cAGCGGC--AUG-CG--------CCACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 39318 0.71 0.284833
Target:  5'- -gCGCCGUGgaguaccucugcuCGCGGcucggcgcGGCgCGGCGCCGg -3'
miRNA:   3'- caGCGGCAU-------------GCGCCa-------CCG-GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 39465 0.74 0.198038
Target:  5'- -gCGCCGUGCGC--UGGCCcgGGUGCCGc -3'
miRNA:   3'- caGCGGCAUGCGccACCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 40052 0.75 0.170559
Target:  5'- -gCGCCGUGgagacccaccggccCGCGGgGGCCucgGGCGCCGg -3'
miRNA:   3'- caGCGGCAU--------------GCGCCaCCGG---CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 40131 0.69 0.369231
Target:  5'- cGUCGgCGUcCGCGGcggcgacGGCCGGCcCCGc -3'
miRNA:   3'- -CAGCgGCAuGCGCCa------CCGGCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 43391 0.68 0.45086
Target:  5'- gGUgGCCGU-CGCucGUGGCCGGCaaagaugcgaagGCCa -3'
miRNA:   3'- -CAgCGGCAuGCGc-CACCGGCCG------------CGGc -5'
29373 5' -64.1 NC_006151.1 + 48101 0.65 0.576555
Target:  5'- uGUCGCCGcucgugGCGGUGcugguguuuuuuucGgCGGCGCUGg -3'
miRNA:   3'- -CAGCGGCaug---CGCCAC--------------CgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 48669 0.66 0.541442
Target:  5'- -cCGCCGgg-GCaGG-GGCCGGgGCCu -3'
miRNA:   3'- caGCGGCaugCG-CCaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 48885 0.67 0.486178
Target:  5'- --aGCCGUACGCGc--GCCuGCGCUGg -3'
miRNA:   3'- cagCGGCAUGCGCcacCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 49944 0.66 0.569867
Target:  5'- -cCGCCGggaccuggcCGCGGcccUGGCCGGCcuccCCGu -3'
miRNA:   3'- caGCGGCau-------GCGCC---ACCGGCCGc---GGC- -5'
29373 5' -64.1 NC_006151.1 + 50010 0.68 0.433736
Target:  5'- -gCGCCGcgcGCGCGGcccGCgCGGCGCCc -3'
miRNA:   3'- caGCGGCa--UGCGCCac-CG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 52017 0.7 0.339534
Target:  5'- -gCGCCGcGCcagcuccucgGCGaaGGCCGGCGCCGu -3'
miRNA:   3'- caGCGGCaUG----------CGCcaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 52358 0.67 0.483483
Target:  5'- cGUCGUCGUccgccggcGCGCccccggggcccgcgGGggcGGCgGGCGCCGc -3'
miRNA:   3'- -CAGCGGCA--------UGCG--------------CCa--CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 52454 0.75 0.171786
Target:  5'- -cCGCCGUGa-CGGcGGCCaGGCGCCGg -3'
miRNA:   3'- caGCGGCAUgcGCCaCCGG-CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.