miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 5689 0.68 0.43289
Target:  5'- -cCGCCGUGCcggcgcuGCGGccaccgcugcUGGCUgugcugguGGCGCCGg -3'
miRNA:   3'- caGCGGCAUG-------CGCC----------ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 6403 0.68 0.425317
Target:  5'- -gCGCCGaGCGCGGaGaGCgGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCaC-CGgCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 7711 0.67 0.504323
Target:  5'- -cCGCCGUcggAC-CGG-GGaCCGGCGaCCGg -3'
miRNA:   3'- caGCGGCA---UGcGCCaCC-GGCCGC-GGC- -5'
29373 5' -64.1 NC_006151.1 + 10904 0.7 0.339534
Target:  5'- -gUGCCG-GCGCGGaccggggucgGGCCcacGGCGCCGa -3'
miRNA:   3'- caGCGGCaUGCGCCa---------CCGG---CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 11145 0.71 0.297662
Target:  5'- aUCGCCGc-UGCGGUuuccccuGGCgCGGCGCCu -3'
miRNA:   3'- cAGCGGCauGCGCCA-------CCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 13178 0.69 0.376927
Target:  5'- gGUCGCCGcgGCcgucuCGG-GGCCcgcGGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-UGc----GCCaCCGG---CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 15038 0.67 0.485279
Target:  5'- -gUGCgCGUccacggcGCGCGG-GGCCccGGCGCCu -3'
miRNA:   3'- caGCG-GCA-------UGCGCCaCCGG--CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 17335 0.71 0.279204
Target:  5'- cGUCaGCuCGUGCGUcucGGUGGUgauguagaaCGGCGCCGu -3'
miRNA:   3'- -CAG-CG-GCAUGCG---CCACCG---------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 17711 0.67 0.504323
Target:  5'- -cUGCUGUguGCGCccgGGUGcGCCGGgGCCc -3'
miRNA:   3'- caGCGGCA--UGCG---CCAC-CGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 18469 0.7 0.335232
Target:  5'- cGUCGCCGUcguaguaguccucguGCGUGGgcaGGCUGGUGUa- -3'
miRNA:   3'- -CAGCGGCA---------------UGCGCCa--CCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 18671 0.72 0.24061
Target:  5'- cGUCcgGCCGUacggguuccacgggcGCGCGGgcgGcGCCGGCGUCGu -3'
miRNA:   3'- -CAG--CGGCA---------------UGCGCCa--C-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 18742 0.69 0.389465
Target:  5'- cGUCGCCGccgccggggccccACGgGGUgcccggggcccgGGCCGGgGCCGu -3'
miRNA:   3'- -CAGCGGCa------------UGCgCCA------------CCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 19297 0.68 0.416996
Target:  5'- --gGCCagcgGCGCGGgcGGCCGGuCGCCc -3'
miRNA:   3'- cagCGGca--UGCGCCa-CCGGCC-GCGGc -5'
29373 5' -64.1 NC_006151.1 + 19638 0.7 0.318424
Target:  5'- cGUCGCCGcGCGCgucgagGGUGaaGuuGGCGCCc -3'
miRNA:   3'- -CAGCGGCaUGCG------CCAC--CggCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 20115 0.68 0.45956
Target:  5'- -gCGCCccgGCGaCGGggcuggggGGCgGGCGCCGc -3'
miRNA:   3'- caGCGGca-UGC-GCCa-------CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 20443 0.69 0.392642
Target:  5'- uUCGUCGga-GCGGggcucggGGgUGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCCa------CCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 21534 0.66 0.532069
Target:  5'- uUCgGCCGggGC-CGG-GGCCGGgGCCu -3'
miRNA:   3'- cAG-CGGCa-UGcGCCaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 22085 0.68 0.433736
Target:  5'- -gCGCgGUACGUGGgccGCCGGUggGCCa -3'
miRNA:   3'- caGCGgCAUGCGCCac-CGGCCG--CGGc -5'
29373 5' -64.1 NC_006151.1 + 28278 0.66 0.526474
Target:  5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3'
miRNA:   3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 28838 0.66 0.526474
Target:  5'- -gCcCCGgggACGCGGgcccggcucccccauUGGCCGGCGCg- -3'
miRNA:   3'- caGcGGCa--UGCGCC---------------ACCGGCCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.