miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 39465 0.74 0.198038
Target:  5'- -gCGCCGUGCGC--UGGCCcgGGUGCCGc -3'
miRNA:   3'- caGCGGCAUGCGccACCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64763 0.74 0.198038
Target:  5'- -cCaCCGUGCGCGGgGGCUGGuUGCCGg -3'
miRNA:   3'- caGcGGCAUGCGCCaCCGGCC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 127554 0.73 0.202739
Target:  5'- cGUCGUCGU-CGUGGccgccGCCGGCGCCu -3'
miRNA:   3'- -CAGCGGCAuGCGCCac---CGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 67830 0.73 0.203214
Target:  5'- cGUCGUCGU-CGCGGgggcucagcagcccgGcgaGCCGGCGCCGa -3'
miRNA:   3'- -CAGCGGCAuGCGCCa--------------C---CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3448 0.73 0.209484
Target:  5'- -cCGCCGUcggGCGCGGggugcucgggcaugGGCCcgagcgGGCGCCGg -3'
miRNA:   3'- caGCGGCA---UGCGCCa-------------CCGG------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102679 0.73 0.212433
Target:  5'- -aCGCCGUggACGCGGgGGCgccCGGCGCgGg -3'
miRNA:   3'- caGCGGCA--UGCGCCaCCG---GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 130245 0.73 0.217428
Target:  5'- --aGCCGcagaagGCGCGGaagaGGCCGGCGCgCGg -3'
miRNA:   3'- cagCGGCa-----UGCGCCa---CCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 3112 0.73 0.222523
Target:  5'- -cCGCCGcgGCGCGGgucccaGGCCGGgCGCgGg -3'
miRNA:   3'- caGCGGCa-UGCGCCa-----CCGGCC-GCGgC- -5'
29373 5' -64.1 NC_006151.1 + 65773 0.73 0.222523
Target:  5'- cGUCGCCGccgGCGGcGGCgaUGGCGCCGc -3'
miRNA:   3'- -CAGCGGCaugCGCCaCCG--GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 107530 0.72 0.23842
Target:  5'- -cCGCCGUugGCcccGGcGGCCccgccGGCGCCGc -3'
miRNA:   3'- caGCGGCAugCG---CCaCCGG-----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 18671 0.72 0.24061
Target:  5'- cGUCcgGCCGUacggguuccacgggcGCGCGGgcgGcGCCGGCGUCGu -3'
miRNA:   3'- -CAG--CGGCA---------------UGCGCCa--C-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 56655 0.72 0.243926
Target:  5'- --gGCCGUGuacCGCuGGUGGacgaCGGCGCCGc -3'
miRNA:   3'- cagCGGCAU---GCG-CCACCg---GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 36558 0.72 0.243926
Target:  5'- --aGCCagcaGCGGUGGCCGcaGCGCCGg -3'
miRNA:   3'- cagCGGcaugCGCCACCGGC--CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 85152 0.72 0.243926
Target:  5'- -cCG-CGUGCGgcaGGgGGCCGGCGCCGc -3'
miRNA:   3'- caGCgGCAUGCg--CCaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 138137 0.72 0.249538
Target:  5'- --gGCCGUggACGCGGaGGaCCGGCGCgCGc -3'
miRNA:   3'- cagCGGCA--UGCGCCaCC-GGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 133385 0.72 0.249538
Target:  5'- --gGCCGgg-GCGGcGGCCGGgGCCGa -3'
miRNA:   3'- cagCGGCaugCGCCaCCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 107026 0.72 0.249538
Target:  5'- -gCGCUGaucgcgGCGCGGccccUGGCCGGCgaGCCGg -3'
miRNA:   3'- caGCGGCa-----UGCGCC----ACCGGCCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 139614 0.72 0.254679
Target:  5'- -cCGuCCGgGCGCGGcUGGgggccauCCGGCGCCGg -3'
miRNA:   3'- caGC-GGCaUGCGCC-ACC-------GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 101699 0.72 0.255255
Target:  5'- --aGCCGUACGUGGagcGGgCGGUGCCc -3'
miRNA:   3'- cagCGGCAUGCGCCa--CCgGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 61749 0.72 0.255255
Target:  5'- -aCGCCcuGUACGCGGUcGCgGGgGCCGu -3'
miRNA:   3'- caGCGG--CAUGCGCCAcCGgCCgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.