miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 137728 1.08 0.000661
Target:  5'- cGUCGCCGUACGCGGUGGCCGGCGCCGa -3'
miRNA:   3'- -CAGCGGCAUGCGCCACCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 103626 0.83 0.046891
Target:  5'- -aCGCCG-ACGCGGUGGCggCGGCGCUGg -3'
miRNA:   3'- caGCGGCaUGCGCCACCG--GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 119469 0.81 0.057547
Target:  5'- -aCGCCGUGCGCuacGUGGCCGGCaGCCu -3'
miRNA:   3'- caGCGGCAUGCGc--CACCGGCCG-CGGc -5'
29373 5' -64.1 NC_006151.1 + 130908 0.81 0.062121
Target:  5'- cGUCGCCGU-CGuCGGUGGCCGG-GCCc -3'
miRNA:   3'- -CAGCGGCAuGC-GCCACCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 69694 0.78 0.105421
Target:  5'- cUCGCCGU-CGaUGGUGGCCGcCGCCGg -3'
miRNA:   3'- cAGCGGCAuGC-GCCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 89051 0.78 0.108072
Target:  5'- -gCGcCCGUGCGCGGUGGCCuuguCGCCGu -3'
miRNA:   3'- caGC-GGCAUGCGCCACCGGcc--GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 64626 0.78 0.108072
Target:  5'- -cCGCCGgcCGCGG-GGCgCGGCGCCc -3'
miRNA:   3'- caGCGGCauGCGCCaCCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 118200 0.77 0.113563
Target:  5'- uUCGCCGggcacguggcCGUGGUGGCgGGCGCCc -3'
miRNA:   3'- cAGCGGCau--------GCGCCACCGgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 3606 0.77 0.119313
Target:  5'- uUCGUCGU-CGCGGUGGCCGuG-GCCGu -3'
miRNA:   3'- cAGCGGCAuGCGCCACCGGC-CgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 106214 0.77 0.123499
Target:  5'- cUCGCCcuccccgaccugaugGUGgcCGCGGUGGCCGGCgaGCCGa -3'
miRNA:   3'- cAGCGG---------------CAU--GCGCCACCGGCCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 104401 0.75 0.156054
Target:  5'- aUCGCCGgcgGCGUGcUGGCCcGCGCCGc -3'
miRNA:   3'- cAGCGGCa--UGCGCcACCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 55424 0.75 0.163751
Target:  5'- -gCGCCGcgcaggcggGCGCGGacgGGaCCGGCGCCGc -3'
miRNA:   3'- caGCGGCa--------UGCGCCa--CC-GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 135751 0.75 0.167725
Target:  5'- cGUCGUcuCGUACGC-GUGGgaCGGCGCCGg -3'
miRNA:   3'- -CAGCG--GCAUGCGcCACCg-GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 40052 0.75 0.170559
Target:  5'- -gCGCCGUGgagacccaccggccCGCGGgGGCCucgGGCGCCGg -3'
miRNA:   3'- caGCGGCAU--------------GCGCCaCCGG---CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 52454 0.75 0.171786
Target:  5'- -cCGCCGUGa-CGGcGGCCaGGCGCCGg -3'
miRNA:   3'- caGCGGCAUgcGCCaCCGG-CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 130955 0.75 0.171786
Target:  5'- gGUCGCgCGgGCGCGGgGGCCGGUaccccgGCCGc -3'
miRNA:   3'- -CAGCG-GCaUGCGCCaCCGGCCG------CGGC- -5'
29373 5' -64.1 NC_006151.1 + 131118 0.74 0.193431
Target:  5'- --gGCCGcgGCGCGGgaGGCCgcGGCGCCGc -3'
miRNA:   3'- cagCGGCa-UGCGCCa-CCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 105729 0.74 0.195262
Target:  5'- -gCGCCGUGCGCGcgccugaagcagcgcGUGGCgGcGCGCCu -3'
miRNA:   3'- caGCGGCAUGCGC---------------CACCGgC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 130850 0.74 0.198038
Target:  5'- cGUCGCCGUcggcgGCGCGGgcgggaccgcagUGGgCGGCGgCGg -3'
miRNA:   3'- -CAGCGGCA-----UGCGCC------------ACCgGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 56143 0.74 0.198038
Target:  5'- uUCGCCuu-CGCGGUGGUcaCGGCcGCCGa -3'
miRNA:   3'- cAGCGGcauGCGCCACCG--GCCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.