Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 137728 | 1.08 | 0.000661 |
Target: 5'- cGUCGCCGUACGCGGUGGCCGGCGCCGa -3' miRNA: 3'- -CAGCGGCAUGCGCCACCGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 103626 | 0.83 | 0.046891 |
Target: 5'- -aCGCCG-ACGCGGUGGCggCGGCGCUGg -3' miRNA: 3'- caGCGGCaUGCGCCACCG--GCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 119469 | 0.81 | 0.057547 |
Target: 5'- -aCGCCGUGCGCuacGUGGCCGGCaGCCu -3' miRNA: 3'- caGCGGCAUGCGc--CACCGGCCG-CGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 130908 | 0.81 | 0.062121 |
Target: 5'- cGUCGCCGU-CGuCGGUGGCCGG-GCCc -3' miRNA: 3'- -CAGCGGCAuGC-GCCACCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 69694 | 0.78 | 0.105421 |
Target: 5'- cUCGCCGU-CGaUGGUGGCCGcCGCCGg -3' miRNA: 3'- cAGCGGCAuGC-GCCACCGGCcGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 64626 | 0.78 | 0.108072 |
Target: 5'- -cCGCCGgcCGCGG-GGCgCGGCGCCc -3' miRNA: 3'- caGCGGCauGCGCCaCCG-GCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 89051 | 0.78 | 0.108072 |
Target: 5'- -gCGcCCGUGCGCGGUGGCCuuguCGCCGu -3' miRNA: 3'- caGC-GGCAUGCGCCACCGGcc--GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 118200 | 0.77 | 0.113563 |
Target: 5'- uUCGCCGggcacguggcCGUGGUGGCgGGCGCCc -3' miRNA: 3'- cAGCGGCau--------GCGCCACCGgCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 3606 | 0.77 | 0.119313 |
Target: 5'- uUCGUCGU-CGCGGUGGCCGuG-GCCGu -3' miRNA: 3'- cAGCGGCAuGCGCCACCGGC-CgCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 106214 | 0.77 | 0.123499 |
Target: 5'- cUCGCCcuccccgaccugaugGUGgcCGCGGUGGCCGGCgaGCCGa -3' miRNA: 3'- cAGCGG---------------CAU--GCGCCACCGGCCG--CGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 104401 | 0.75 | 0.156054 |
Target: 5'- aUCGCCGgcgGCGUGcUGGCCcGCGCCGc -3' miRNA: 3'- cAGCGGCa--UGCGCcACCGGcCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 55424 | 0.75 | 0.163751 |
Target: 5'- -gCGCCGcgcaggcggGCGCGGacgGGaCCGGCGCCGc -3' miRNA: 3'- caGCGGCa--------UGCGCCa--CC-GGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 135751 | 0.75 | 0.167725 |
Target: 5'- cGUCGUcuCGUACGC-GUGGgaCGGCGCCGg -3' miRNA: 3'- -CAGCG--GCAUGCGcCACCg-GCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 40052 | 0.75 | 0.170559 |
Target: 5'- -gCGCCGUGgagacccaccggccCGCGGgGGCCucgGGCGCCGg -3' miRNA: 3'- caGCGGCAU--------------GCGCCaCCGG---CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 130955 | 0.75 | 0.171786 |
Target: 5'- gGUCGCgCGgGCGCGGgGGCCGGUaccccgGCCGc -3' miRNA: 3'- -CAGCG-GCaUGCGCCaCCGGCCG------CGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 52454 | 0.75 | 0.171786 |
Target: 5'- -cCGCCGUGa-CGGcGGCCaGGCGCCGg -3' miRNA: 3'- caGCGGCAUgcGCCaCCGG-CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 131118 | 0.74 | 0.193431 |
Target: 5'- --gGCCGcgGCGCGGgaGGCCgcGGCGCCGc -3' miRNA: 3'- cagCGGCa-UGCGCCa-CCGG--CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 105729 | 0.74 | 0.195262 |
Target: 5'- -gCGCCGUGCGCGcgccugaagcagcgcGUGGCgGcGCGCCu -3' miRNA: 3'- caGCGGCAUGCGC---------------CACCGgC-CGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 64763 | 0.74 | 0.198038 |
Target: 5'- -cCaCCGUGCGCGGgGGCUGGuUGCCGg -3' miRNA: 3'- caGcGGCAUGCGCCaCCGGCC-GCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 130850 | 0.74 | 0.198038 |
Target: 5'- cGUCGCCGUcggcgGCGCGGgcgggaccgcagUGGgCGGCGgCGg -3' miRNA: 3'- -CAGCGGCA-----UGCGCC------------ACCgGCCGCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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