miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 36866 0.65 0.578469
Target:  5'- cUCGCCGgggACgGCGGggcgcccccGcagagacagccccGCCGGCGCCGc -3'
miRNA:   3'- cAGCGGCa--UG-CGCCa--------C-------------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 69268 0.65 0.577512
Target:  5'- cUCGCCGgucugguaguggcgGCGCgccaccagggacacgGGccGCCGGCGCCa -3'
miRNA:   3'- cAGCGGCa-------------UGCG---------------CCacCGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 48101 0.65 0.576555
Target:  5'- uGUCGCCGcucgugGCGGUGcugguguuuuuuucGgCGGCGCUGg -3'
miRNA:   3'- -CAGCGGCaug---CGCCAC--------------CgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 123943 0.66 0.550869
Target:  5'- cUCGCCG-ACGCccgGGaCgGGCGCCa -3'
miRNA:   3'- cAGCGGCaUGCGccaCC-GgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 3878 0.66 0.550869
Target:  5'- -cCGCCGc-CGcCGGc-GCCGGCGCUGg -3'
miRNA:   3'- caGCGGCauGC-GCCacCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 135159 0.66 0.550869
Target:  5'- -cCGgCGgGCGCGGcccGGaCgGGCGCCGg -3'
miRNA:   3'- caGCgGCaUGCGCCa--CC-GgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 100105 0.66 0.550869
Target:  5'- -gCGCCGcccuCGCuGGcGGCCaGCGCCu -3'
miRNA:   3'- caGCGGCau--GCG-CCaCCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 81189 0.66 0.550869
Target:  5'- -cCGCCGaGCGUGuacgccgGGCCgcaguccgGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGCca-----CCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73688 0.66 0.550869
Target:  5'- cUCGUCG-GCGCGGcucUGcGCCGcGUGCUGg -3'
miRNA:   3'- cAGCGGCaUGCGCC---AC-CGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73264 0.66 0.550869
Target:  5'- -gCGCC--AgGCGGUuGCCGGCGuuGa -3'
miRNA:   3'- caGCGGcaUgCGCCAcCGGCCGCggC- -5'
29373 5' -64.1 NC_006151.1 + 64585 0.66 0.559396
Target:  5'- gGUCGUgcaCGUACGCcaGGcGGUacgccagCGGCGCCGc -3'
miRNA:   3'- -CAGCG---GCAUGCG--CCaCCG-------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 71655 0.66 0.559396
Target:  5'- --gGCCGUcgaagaugcacacGCGCGccacgGGCCGcGUGCCGa -3'
miRNA:   3'- cagCGGCA-------------UGCGCca---CCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 110864 0.66 0.560346
Target:  5'- aGUCGCUGgugGCGaacaugGGCUGGCGCUc -3'
miRNA:   3'- -CAGCGGCa--UGCgcca--CCGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 66566 0.66 0.568913
Target:  5'- -cCGCCGUggacccggcgcucGCGCGcGcGGCCgaGGCGCuCGa -3'
miRNA:   3'- caGCGGCA-------------UGCGC-CaCCGG--CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 118887 0.66 0.569867
Target:  5'- -gCGgCGgcgACGCGGccGCCGGCgGCCu -3'
miRNA:   3'- caGCgGCa--UGCGCCacCGGCCG-CGGc -5'
29373 5' -64.1 NC_006151.1 + 49944 0.66 0.569867
Target:  5'- -cCGCCGggaccuggcCGCGGcccUGGCCGGCcuccCCGu -3'
miRNA:   3'- caGCGGCau-------GCGCC---ACCGGCCGc---GGC- -5'
29373 5' -64.1 NC_006151.1 + 77218 0.66 0.569867
Target:  5'- -gCGCCGccGCGUGuGUGcGCCgggaGGCGCCc -3'
miRNA:   3'- caGCGGCa-UGCGC-CAC-CGG----CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 92681 0.66 0.569867
Target:  5'- --gGCCGgggACGCGcGcucGCCGcGCGCCGa -3'
miRNA:   3'- cagCGGCa--UGCGC-Cac-CGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 127363 0.66 0.569867
Target:  5'- cUCGCCcUGgGCGGggaccgcgggggUGGCgGGgGCCGc -3'
miRNA:   3'- cAGCGGcAUgCGCC------------ACCGgCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 31759 0.66 0.550869
Target:  5'- -gCGCC-UGCgGCGGcGGgCGcGCGCCGg -3'
miRNA:   3'- caGCGGcAUG-CGCCaCCgGC-CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.