miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 645 0.66 0.522756
Target:  5'- -aCGCCGgcuuccgggGCGCGGccggGGCgGGCuCCGc -3'
miRNA:   3'- caGCGGCa--------UGCGCCa---CCGgCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 2108 0.68 0.45956
Target:  5'- --aGCgGgcCGCGG-GGCCGGCcgucGCCGc -3'
miRNA:   3'- cagCGgCauGCGCCaCCGGCCG----CGGC- -5'
29373 5' -64.1 NC_006151.1 + 2160 0.66 0.522756
Target:  5'- aGUCcCCGUccuCGcCGG-GGCCGGCcCCGg -3'
miRNA:   3'- -CAGcGGCAu--GC-GCCaCCGGCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 2874 0.66 0.544265
Target:  5'- --gGCCGUcCGCGGgccaguccucgauggUGuccagcacgaugaGCCGGCGCCGc -3'
miRNA:   3'- cagCGGCAuGCGCC---------------AC-------------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3112 0.73 0.222523
Target:  5'- -cCGCCGcgGCGCGGgucccaGGCCGGgCGCgGg -3'
miRNA:   3'- caGCGGCa-UGCGCCa-----CCGGCC-GCGgC- -5'
29373 5' -64.1 NC_006151.1 + 3448 0.73 0.209484
Target:  5'- -cCGCCGUcggGCGCGGggugcucgggcaugGGCCcgagcgGGCGCCGg -3'
miRNA:   3'- caGCGGCA---UGCGCCa-------------CCGG------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3606 0.77 0.119313
Target:  5'- uUCGUCGU-CGCGGUGGCCGuG-GCCGu -3'
miRNA:   3'- cAGCGGCAuGCGCCACCGGC-CgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3669 0.69 0.369231
Target:  5'- cUCGCCGUccccgGgGCGGcgGGCCccgGGCGCgCGg -3'
miRNA:   3'- cAGCGGCA-----UgCGCCa-CCGG---CCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 3717 0.71 0.273054
Target:  5'- -gCGCCGcucggGCGCuGGguccgGGCCGGCGgCGg -3'
miRNA:   3'- caGCGGCa----UGCG-CCa----CCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 3878 0.66 0.550869
Target:  5'- -cCGCCGc-CGcCGGc-GCCGGCGCUGg -3'
miRNA:   3'- caGCGGCauGC-GCCacCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 3941 0.67 0.507988
Target:  5'- --gGCCGgGCGCGGgcuccgcgggcccgGGCCGcGCGgCGg -3'
miRNA:   3'- cagCGGCaUGCGCCa-------------CCGGC-CGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 3988 0.68 0.45086
Target:  5'- --aGCCGgcCGCGGccacguUGGCCGGgGCg- -3'
miRNA:   3'- cagCGGCauGCGCC------ACCGGCCgCGgc -5'
29373 5' -64.1 NC_006151.1 + 4220 0.69 0.376927
Target:  5'- --gGCCGggGCGCGGgcgGGCgCGGgcaGCCGg -3'
miRNA:   3'- cagCGGCa-UGCGCCa--CCG-GCCg--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 4327 0.66 0.550869
Target:  5'- --gGCCGggcUGCGCGGcGGCgaaggCGGCGCgGa -3'
miRNA:   3'- cagCGGC---AUGCGCCaCCG-----GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 4382 0.68 0.442251
Target:  5'- gGUCGCCuccccgGCGCGGgGGUccgCGGCGCgGc -3'
miRNA:   3'- -CAGCGGca----UGCGCCaCCG---GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 4606 0.72 0.26108
Target:  5'- cGUgGCCGUgggGCGC-GUGGacCCGGCGCUGg -3'
miRNA:   3'- -CAgCGGCA---UGCGcCACC--GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 4869 0.7 0.346794
Target:  5'- -cCGCCGUagcggACGCGGccgucGGCCGGagggucggaGCCGg -3'
miRNA:   3'- caGCGGCA-----UGCGCCa----CCGGCCg--------CGGC- -5'
29373 5' -64.1 NC_006151.1 + 5015 0.7 0.346794
Target:  5'- --gGCCGg--GCGGgcuccggGGCCGGgGCCGg -3'
miRNA:   3'- cagCGGCaugCGCCa------CCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5074 0.69 0.384731
Target:  5'- --gGCCGagggcCGCGGggccgcGGCgGGCGCCGg -3'
miRNA:   3'- cagCGGCau---GCGCCa-----CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5239 0.67 0.504323
Target:  5'- -gCGCCGcGCgGCGGcGGCgGGgGCCc -3'
miRNA:   3'- caGCGGCaUG-CGCCaCCGgCCgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.