miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 142314 0.67 0.486178
Target:  5'- -gCGCCGUAUG-GG-GGCCcgcgcgcucgcGGCGCCc -3'
miRNA:   3'- caGCGGCAUGCgCCaCCGG-----------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 141634 0.66 0.541442
Target:  5'- gGUCGCUGc-CGCGGcGGCgCGGCgggGCCc -3'
miRNA:   3'- -CAGCGGCauGCGCCaCCG-GCCG---CGGc -5'
29373 5' -64.1 NC_006151.1 + 140282 0.66 0.522756
Target:  5'- -cCGUCG-ACGagcucGUGcGCCGGCGCCGc -3'
miRNA:   3'- caGCGGCaUGCgc---CAC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 139814 0.67 0.477222
Target:  5'- -cCGCCGUcuccgcgacgcACGCGcG-GGUCGGCGCg- -3'
miRNA:   3'- caGCGGCA-----------UGCGC-CaCCGGCCGCGgc -5'
29373 5' -64.1 NC_006151.1 + 139614 0.72 0.254679
Target:  5'- -cCGuCCGgGCGCGGcUGGgggccauCCGGCGCCGg -3'
miRNA:   3'- caGC-GGCaUGCGCC-ACC-------GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 138720 0.67 0.486178
Target:  5'- -gCGCCGcGCGCGGgucgUGuaCGcGCGCCGc -3'
miRNA:   3'- caGCGGCaUGCGCC----ACcgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 138137 0.72 0.249538
Target:  5'- --gGCCGUggACGCGGaGGaCCGGCGCgCGc -3'
miRNA:   3'- cagCGGCA--UGCGCCaCC-GGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 137728 1.08 0.000661
Target:  5'- cGUCGCCGUACGCGGUGGCCGGCGCCGa -3'
miRNA:   3'- -CAGCGGCAUGCGCCACCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 137601 0.67 0.468348
Target:  5'- gGUCGggaUCGgggGCGCGGgcggGGaccCCGGCGCCu -3'
miRNA:   3'- -CAGC---GGCa--UGCGCCa---CC---GGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 137035 0.68 0.45086
Target:  5'- -cUGCCGgACGC-GUGccccCCGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGcCACc---GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 136952 0.67 0.477222
Target:  5'- -gCGCCGUccuGCGCcgccugcuGGagcUGGCCGccGCGCCGg -3'
miRNA:   3'- caGCGGCA---UGCG--------CC---ACCGGC--CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 135751 0.75 0.167725
Target:  5'- cGUCGUcuCGUACGC-GUGGgaCGGCGCCGg -3'
miRNA:   3'- -CAGCG--GCAUGCGcCACCg-GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 135360 0.69 0.369231
Target:  5'- --aGCCGccGCGCGuUGGCCGcguGCGCCGc -3'
miRNA:   3'- cagCGGCa-UGCGCcACCGGC---CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 135159 0.66 0.550869
Target:  5'- -cCGgCGgGCGCGGcccGGaCgGGCGCCGg -3'
miRNA:   3'- caGCgGCaUGCGCCa--CC-GgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 134792 0.67 0.477222
Target:  5'- --gGCCuGUGaggcCGCGGcGGCCcGCGCCGg -3'
miRNA:   3'- cagCGG-CAU----GCGCCaCCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 133385 0.72 0.249538
Target:  5'- --gGCCGgg-GCGGcGGCCGGgGCCGa -3'
miRNA:   3'- cagCGGCaugCGCCaCCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 131763 0.69 0.384731
Target:  5'- cGUCGCgGUcgcgacCGCGGccGCgGGCGCCGc -3'
miRNA:   3'- -CAGCGgCAu-----GCGCCacCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 131712 0.68 0.417824
Target:  5'- cGUCGCgGgggaugaggugguagGCGgGGUGGCgGGC-CCGg -3'
miRNA:   3'- -CAGCGgCa--------------UGCgCCACCGgCCGcGGC- -5'
29373 5' -64.1 NC_006151.1 + 131118 0.74 0.193431
Target:  5'- --gGCCGcgGCGCGGgaGGCCgcGGCGCCGc -3'
miRNA:   3'- cagCGGCa-UGCGCCa-CCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 130955 0.75 0.171786
Target:  5'- gGUCGCgCGgGCGCGGgGGCCGGUaccccgGCCGc -3'
miRNA:   3'- -CAGCG-GCaUGCGCCaCCGGCCG------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.