miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 130908 0.81 0.062121
Target:  5'- cGUCGCCGU-CGuCGGUGGCCGG-GCCc -3'
miRNA:   3'- -CAGCGGCAuGC-GCCACCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 130850 0.74 0.198038
Target:  5'- cGUCGCCGUcggcgGCGCGGgcgggaccgcagUGGgCGGCGgCGg -3'
miRNA:   3'- -CAGCGGCA-----UGCGCC------------ACCgGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 130347 0.66 0.541442
Target:  5'- -gCGCCGcggcguCGUGGUugacGGCCGcgcGCGCCGc -3'
miRNA:   3'- caGCGGCau----GCGCCA----CCGGC---CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 130245 0.73 0.217428
Target:  5'- --aGCCGcagaagGCGCGGaagaGGCCGGCGCgCGg -3'
miRNA:   3'- cagCGGCa-----UGCGCCa---CCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 129685 0.66 0.541442
Target:  5'- -cCGuCCGgcCGCcGUGGaccgCGGCGCCGa -3'
miRNA:   3'- caGC-GGCauGCGcCACCg---GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 129528 0.69 0.376927
Target:  5'- -cCGCCG-ACGgGGgGGcCCGGgGCCGc -3'
miRNA:   3'- caGCGGCaUGCgCCaCC-GGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 129004 0.7 0.346794
Target:  5'- -cCGCCGUgaugcccuucaGCGCGGcgucGGCCGcGCGCgCGu -3'
miRNA:   3'- caGCGGCA-----------UGCGCCa---CCGGC-CGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 128795 0.67 0.509825
Target:  5'- gGUCGCCucggcgagcgcgGCGCGcGUGGCCccguacgcGGCGCUc -3'
miRNA:   3'- -CAGCGGca----------UGCGC-CACCGG--------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 128551 0.67 0.468348
Target:  5'- -cCGCCG-GCGCGGU-GCCGcccaaagaGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGCCAcCGGC--------CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 128003 0.68 0.442251
Target:  5'- cGUCGCgGU-CGCGG-GG-CGGCGgCGa -3'
miRNA:   3'- -CAGCGgCAuGCGCCaCCgGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 127554 0.73 0.202739
Target:  5'- cGUCGUCGU-CGUGGccgccGCCGGCGCCu -3'
miRNA:   3'- -CAGCGGCAuGCGCCac---CGGCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 127436 0.68 0.45956
Target:  5'- -gCGCuCGUGCGCGagaGCCGGCGgCGc -3'
miRNA:   3'- caGCG-GCAUGCGCcacCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 127363 0.66 0.569867
Target:  5'- cUCGCCcUGgGCGGggaccgcgggggUGGCgGGgGCCGc -3'
miRNA:   3'- cAGCGGcAUgCGCC------------ACCGgCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 127255 0.7 0.332386
Target:  5'- -gCGgCGcgacGCGCGGUGGCCGGUgagGUCGa -3'
miRNA:   3'- caGCgGCa---UGCGCCACCGGCCG---CGGC- -5'
29373 5' -64.1 NC_006151.1 + 126049 0.67 0.504323
Target:  5'- -cCGCCGUcgGCaaGGUGGUCcugGGUGCCa -3'
miRNA:   3'- caGCGGCA--UGcgCCACCGG---CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 125532 0.68 0.442251
Target:  5'- cUCGCgGUGCGUGGaGGUgcgCGGCGgCGu -3'
miRNA:   3'- cAGCGgCAUGCGCCaCCG---GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 124075 0.67 0.486178
Target:  5'- --gGCCGUGCGCGc-GGCC-GCGaCCGa -3'
miRNA:   3'- cagCGGCAUGCGCcaCCGGcCGC-GGC- -5'
29373 5' -64.1 NC_006151.1 + 123943 0.66 0.550869
Target:  5'- cUCGCCG-ACGCccgGGaCgGGCGCCa -3'
miRNA:   3'- cAGCGGCaUGCGccaCC-GgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 123902 0.71 0.291834
Target:  5'- -cCGCCGUgcgGCGCGGcGGCCGuGaCGCgGg -3'
miRNA:   3'- caGCGGCA---UGCGCCaCCGGC-C-GCGgC- -5'
29373 5' -64.1 NC_006151.1 + 123029 0.68 0.45956
Target:  5'- -aCGCCGUGgCGUGGgcggaccugccGGCCgcGGCGCUGc -3'
miRNA:   3'- caGCGGCAU-GCGCCa----------CCGG--CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.