miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 3878 0.66 0.550869
Target:  5'- -cCGCCGc-CGcCGGc-GCCGGCGCUGg -3'
miRNA:   3'- caGCGGCauGC-GCCacCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 123943 0.66 0.550869
Target:  5'- cUCGCCG-ACGCccgGGaCgGGCGCCa -3'
miRNA:   3'- cAGCGGCaUGCGccaCC-GgCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 2874 0.66 0.544265
Target:  5'- --gGCCGUcCGCGGgccaguccucgauggUGuccagcacgaugaGCCGGCGCCGc -3'
miRNA:   3'- cagCGGCAuGCGCC---------------AC-------------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 129685 0.66 0.541442
Target:  5'- -cCGuCCGgcCGCcGUGGaccgCGGCGCCGa -3'
miRNA:   3'- caGC-GGCauGCGcCACCg---GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75593 0.66 0.541442
Target:  5'- gGUCGCCGacgACGacgaGGUcGGCgCGcacgcGCGCCGa -3'
miRNA:   3'- -CAGCGGCa--UGCg---CCA-CCG-GC-----CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 54449 0.66 0.541442
Target:  5'- -gCGCC---CGCcGUGGCCGaGCGCCu -3'
miRNA:   3'- caGCGGcauGCGcCACCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 64804 0.66 0.541442
Target:  5'- -aCGCCcu-CGCGGaaGCCGGCgGCCa -3'
miRNA:   3'- caGCGGcauGCGCCacCGGCCG-CGGc -5'
29373 5' -64.1 NC_006151.1 + 130347 0.66 0.541442
Target:  5'- -gCGCCGcggcguCGUGGUugacGGCCGcgcGCGCCGc -3'
miRNA:   3'- caGCGGCau----GCGCCA----CCGGC---CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 141634 0.66 0.541442
Target:  5'- gGUCGCUGc-CGCGGcGGCgCGGCgggGCCc -3'
miRNA:   3'- -CAGCGGCauGCGCCaCCG-GCCG---CGGc -5'
29373 5' -64.1 NC_006151.1 + 48669 0.66 0.541442
Target:  5'- -cCGCCGgg-GCaGG-GGCCGGgGCCu -3'
miRNA:   3'- caGCGGCaugCG-CCaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 68042 0.66 0.541442
Target:  5'- -cCGCCG-GCGCGGcgggcacgGGCuCGGCGaCGg -3'
miRNA:   3'- caGCGGCaUGCGCCa-------CCG-GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 91023 0.66 0.541442
Target:  5'- cGUCGCgGUcGCGCGccgGGaaggucacgaccCCGGCGCUGg -3'
miRNA:   3'- -CAGCGgCA-UGCGCca-CC------------GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122120 0.66 0.541442
Target:  5'- -aCGCCccACGCGGUGGaCCuGUcgGCCGu -3'
miRNA:   3'- caGCGGcaUGCGCCACC-GGcCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 57439 0.66 0.540502
Target:  5'- -aCGuCCGU-CGCGGcGGCCcccgcgucggccaGGUGCCGc -3'
miRNA:   3'- caGC-GGCAuGCGCCaCCGG-------------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 85351 0.66 0.534875
Target:  5'- cUCGCCGcgcugGCGCGccugcgcGUGGUccccggcgcgaacguCGGCGCCa -3'
miRNA:   3'- cAGCGGCa----UGCGC-------CACCG---------------GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 63164 0.66 0.533004
Target:  5'- -aCGCgGUACGgGGccuuggggcgcacggGGCCGGgcuCGCCGa -3'
miRNA:   3'- caGCGgCAUGCgCCa--------------CCGGCC---GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 71758 0.66 0.532069
Target:  5'- -gCGCCGcGCGUGGUccugcGGCagCGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCA-----CCG--GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 21534 0.66 0.532069
Target:  5'- uUCgGCCGggGC-CGG-GGCCGGgGCCu -3'
miRNA:   3'- cAG-CGGCa-UGcGCCaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 104067 0.66 0.532069
Target:  5'- --gGCCG-ACGCGGcgcUGcGCCG-CGCCGa -3'
miRNA:   3'- cagCGGCaUGCGCC---AC-CGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 99148 0.66 0.532069
Target:  5'- --gGCCGUGCaC-GUGGCCGcCGCCGc -3'
miRNA:   3'- cagCGGCAUGcGcCACCGGCcGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.