Results 41 - 60 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 5' | -64.1 | NC_006151.1 | + | 92681 | 0.66 | 0.569867 |
Target: 5'- --gGCCGgggACGCGcGcucGCCGcGCGCCGa -3' miRNA: 3'- cagCGGCa--UGCGC-Cac-CGGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 127363 | 0.66 | 0.569867 |
Target: 5'- cUCGCCcUGgGCGGggaccgcgggggUGGCgGGgGCCGc -3' miRNA: 3'- cAGCGGcAUgCGCC------------ACCGgCCgCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 102279 | 0.66 | 0.569867 |
Target: 5'- -cUGCCGgaGCGCGGcccGGCCGGggacuuuguggcCGCCa -3' miRNA: 3'- caGCGGCa-UGCGCCa--CCGGCC------------GCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 48101 | 0.65 | 0.576555 |
Target: 5'- uGUCGCCGcucgugGCGGUGcugguguuuuuuucGgCGGCGCUGg -3' miRNA: 3'- -CAGCGGCaug---CGCCAC--------------CgGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 69268 | 0.65 | 0.577512 |
Target: 5'- cUCGCCGgucugguaguggcgGCGCgccaccagggacacgGGccGCCGGCGCCa -3' miRNA: 3'- cAGCGGCa-------------UGCG---------------CCacCGGCCGCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 3878 | 0.66 | 0.550869 |
Target: 5'- -cCGCCGc-CGcCGGc-GCCGGCGCUGg -3' miRNA: 3'- caGCGGCauGC-GCCacCGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 135159 | 0.66 | 0.550869 |
Target: 5'- -cCGgCGgGCGCGGcccGGaCgGGCGCCGg -3' miRNA: 3'- caGCgGCaUGCGCCa--CC-GgCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 130347 | 0.66 | 0.541442 |
Target: 5'- -gCGCCGcggcguCGUGGUugacGGCCGcgcGCGCCGc -3' miRNA: 3'- caGCGGCau----GCGCCA----CCGGC---CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 141634 | 0.66 | 0.541442 |
Target: 5'- gGUCGCUGc-CGCGGcGGCgCGGCgggGCCc -3' miRNA: 3'- -CAGCGGCauGCGCCaCCG-GCCG---CGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 48669 | 0.66 | 0.541442 |
Target: 5'- -cCGCCGgg-GCaGG-GGCCGGgGCCu -3' miRNA: 3'- caGCGGCaugCG-CCaCCGGCCgCGGc -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 68042 | 0.66 | 0.541442 |
Target: 5'- -cCGCCG-GCGCGGcgggcacgGGCuCGGCGaCGg -3' miRNA: 3'- caGCGGCaUGCGCCa-------CCG-GCCGCgGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 91023 | 0.66 | 0.541442 |
Target: 5'- cGUCGCgGUcGCGCGccgGGaaggucacgaccCCGGCGCUGg -3' miRNA: 3'- -CAGCGgCA-UGCGCca-CC------------GGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 122120 | 0.66 | 0.541442 |
Target: 5'- -aCGCCccACGCGGUGGaCCuGUcgGCCGu -3' miRNA: 3'- caGCGGcaUGCGCCACC-GGcCG--CGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 2874 | 0.66 | 0.544265 |
Target: 5'- --gGCCGUcCGCGGgccaguccucgauggUGuccagcacgaugaGCCGGCGCCGc -3' miRNA: 3'- cagCGGCAuGCGCC---------------AC-------------CGGCCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 4327 | 0.66 | 0.550869 |
Target: 5'- --gGCCGggcUGCGCGGcGGCgaaggCGGCGCgGa -3' miRNA: 3'- cagCGGC---AUGCGCCaCCG-----GCCGCGgC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 31759 | 0.66 | 0.550869 |
Target: 5'- -gCGCC-UGCgGCGGcGGgCGcGCGCCGg -3' miRNA: 3'- caGCGGcAUG-CGCCaCCgGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 73264 | 0.66 | 0.550869 |
Target: 5'- -gCGCC--AgGCGGUuGCCGGCGuuGa -3' miRNA: 3'- caGCGGcaUgCGCCAcCGGCCGCggC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 73688 | 0.66 | 0.550869 |
Target: 5'- cUCGUCG-GCGCGGcucUGcGCCGcGUGCUGg -3' miRNA: 3'- cAGCGGCaUGCGCC---AC-CGGC-CGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 81189 | 0.66 | 0.550869 |
Target: 5'- -cCGCCGaGCGUGuacgccgGGCCgcaguccgGGCGCCGg -3' miRNA: 3'- caGCGGCaUGCGCca-----CCGG--------CCGCGGC- -5' |
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29373 | 5' | -64.1 | NC_006151.1 | + | 100105 | 0.66 | 0.550869 |
Target: 5'- -gCGCCGcccuCGCuGGcGGCCaGCGCCu -3' miRNA: 3'- caGCGGCau--GCG-CCaCCGGcCGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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