miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 3878 0.66 0.550869
Target:  5'- -cCGCCGc-CGcCGGc-GCCGGCGCUGg -3'
miRNA:   3'- caGCGGCauGC-GCCacCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 135159 0.66 0.550869
Target:  5'- -cCGgCGgGCGCGGcccGGaCgGGCGCCGg -3'
miRNA:   3'- caGCgGCaUGCGCCa--CC-GgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 48669 0.66 0.541442
Target:  5'- -cCGCCGgg-GCaGG-GGCCGGgGCCu -3'
miRNA:   3'- caGCGGCaugCG-CCaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 68042 0.66 0.541442
Target:  5'- -cCGCCG-GCGCGGcgggcacgGGCuCGGCGaCGg -3'
miRNA:   3'- caGCGGCaUGCGCCa-------CCG-GCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 91023 0.66 0.541442
Target:  5'- cGUCGCgGUcGCGCGccgGGaaggucacgaccCCGGCGCUGg -3'
miRNA:   3'- -CAGCGgCA-UGCGCca-CC------------GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122120 0.66 0.541442
Target:  5'- -aCGCCccACGCGGUGGaCCuGUcgGCCGu -3'
miRNA:   3'- caGCGGcaUGCGCCACC-GGcCG--CGGC- -5'
29373 5' -64.1 NC_006151.1 + 2874 0.66 0.544265
Target:  5'- --gGCCGUcCGCGGgccaguccucgauggUGuccagcacgaugaGCCGGCGCCGc -3'
miRNA:   3'- cagCGGCAuGCGCC---------------AC-------------CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 4327 0.66 0.550869
Target:  5'- --gGCCGggcUGCGCGGcGGCgaaggCGGCGCgGa -3'
miRNA:   3'- cagCGGC---AUGCGCCaCCG-----GCCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 31759 0.66 0.550869
Target:  5'- -gCGCC-UGCgGCGGcGGgCGcGCGCCGg -3'
miRNA:   3'- caGCGGcAUG-CGCCaCCgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 73264 0.66 0.550869
Target:  5'- -gCGCC--AgGCGGUuGCCGGCGuuGa -3'
miRNA:   3'- caGCGGcaUgCGCCAcCGGCCGCggC- -5'
29373 5' -64.1 NC_006151.1 + 73688 0.66 0.550869
Target:  5'- cUCGUCG-GCGCGGcucUGcGCCGcGUGCUGg -3'
miRNA:   3'- cAGCGGCaUGCGCC---AC-CGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 81189 0.66 0.550869
Target:  5'- -cCGCCGaGCGUGuacgccgGGCCgcaguccgGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGCca-----CCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 100105 0.66 0.550869
Target:  5'- -gCGCCGcccuCGCuGGcGGCCaGCGCCu -3'
miRNA:   3'- caGCGGCau--GCG-CCaCCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 99829 0.67 0.504323
Target:  5'- uUCGUCGUGacgGCcGUGGCCGaCGCCu -3'
miRNA:   3'- cAGCGGCAUg--CGcCACCGGCcGCGGc -5'
29373 5' -64.1 NC_006151.1 + 126049 0.67 0.504323
Target:  5'- -cCGCCGUcgGCaaGGUGGUCcugGGUGCCa -3'
miRNA:   3'- caGCGGCA--UGcgCCACCGG---CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 7711 0.67 0.504323
Target:  5'- -cCGCCGUcggAC-CGG-GGaCCGGCGaCCGg -3'
miRNA:   3'- caGCGGCA---UGcGCCaCC-GGCCGC-GGC- -5'
29373 5' -64.1 NC_006151.1 + 3941 0.67 0.507988
Target:  5'- --gGCCGgGCGCGGgcuccgcgggcccgGGCCGcGCGgCGg -3'
miRNA:   3'- cagCGGCaUGCGCCa-------------CCGGC-CGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 128795 0.67 0.509825
Target:  5'- gGUCGCCucggcgagcgcgGCGCGcGUGGCCccguacgcGGCGCUc -3'
miRNA:   3'- -CAGCGGca----------UGCGC-CACCGG--------CCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 54694 0.67 0.513506
Target:  5'- cGUCGCCGgcaGCGUGcugGGCCaGgGCCu -3'
miRNA:   3'- -CAGCGGCa--UGCGCca-CCGGcCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 68281 0.67 0.504323
Target:  5'- -gCGCCGgGCGCcacGGcGGCCaGGCGCgCGc -3'
miRNA:   3'- caGCGGCaUGCG---CCaCCGG-CCGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.