miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 52875 0.67 0.495213
Target:  5'- cUCGCgGUAC-CGGUcGaaGGCGCCGu -3'
miRNA:   3'- cAGCGgCAUGcGCCAcCggCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 54414 0.66 0.532069
Target:  5'- -gCGCCG-AgGCGcUGGCgCGGCGCUu -3'
miRNA:   3'- caGCGGCaUgCGCcACCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 54449 0.66 0.541442
Target:  5'- -gCGCC---CGCcGUGGCCGaGCGCCu -3'
miRNA:   3'- caGCGGcauGCGcCACCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 54694 0.67 0.513506
Target:  5'- cGUCGCCGgcaGCGUGcugGGCCaGgGCCu -3'
miRNA:   3'- -CAGCGGCa--UGCGCca-CCGGcCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 55006 0.71 0.291834
Target:  5'- cUCGUCGgGCGCaagcccgccgagGGgcacccGGCCGGCGCCGu -3'
miRNA:   3'- cAGCGGCaUGCG------------CCa-----CCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 55424 0.75 0.163751
Target:  5'- -gCGCCGcgcaggcggGCGCGGacgGGaCCGGCGCCGc -3'
miRNA:   3'- caGCGGCa--------UGCGCCa--CC-GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 55466 0.68 0.408776
Target:  5'- -cCGCCGggggGCGCGcgc-CCGGCGCCGc -3'
miRNA:   3'- caGCGGCa---UGCGCcaccGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 55882 0.68 0.425317
Target:  5'- -gCGCUGU-CGCGGcGGaCGuGCGCCGg -3'
miRNA:   3'- caGCGGCAuGCGCCaCCgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 56143 0.74 0.198038
Target:  5'- uUCGCCuu-CGCGGUGGUcaCGGCcGCCGa -3'
miRNA:   3'- cAGCGGcauGCGCCACCG--GCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 56309 0.67 0.504323
Target:  5'- -aCGCC--GCGCGGUgccugagccugGGCCGGUgGCUGg -3'
miRNA:   3'- caGCGGcaUGCGCCA-----------CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 56359 0.68 0.45086
Target:  5'- -cCGCCG-GCGCGGaaGCuaCGGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGCCacCG--GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 56655 0.72 0.243926
Target:  5'- --gGCCGUGuacCGCuGGUGGacgaCGGCGCCGc -3'
miRNA:   3'- cagCGGCAU---GCG-CCACCg---GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 57439 0.66 0.540502
Target:  5'- -aCGuCCGU-CGCGGcGGCCcccgcgucggccaGGUGCCGc -3'
miRNA:   3'- caGC-GGCAuGCGCCaCCGG-------------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 58140 0.71 0.304906
Target:  5'- -gCGCCGUACGC---GGCCGcGUGCCa -3'
miRNA:   3'- caGCGGCAUGCGccaCCGGC-CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 58651 0.72 0.267012
Target:  5'- -gCGCCGggaggGCGCGGcgcagGGCCGccaugaccGCGCCGu -3'
miRNA:   3'- caGCGGCa----UGCGCCa----CCGGC--------CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 59143 0.68 0.408776
Target:  5'- -gCGcCCGcGgGCGGguccaGGCCGGCGUCGc -3'
miRNA:   3'- caGC-GGCaUgCGCCa----CCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 60632 0.69 0.392642
Target:  5'- cGUCGUCGggGCGgGGcucccGGCCcGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-UGCgCCa----CCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 61749 0.72 0.255255
Target:  5'- -aCGCCcuGUACGCGGUcGCgGGgGCCGu -3'
miRNA:   3'- caGCGG--CAUGCGCCAcCGgCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 62085 0.7 0.318424
Target:  5'- cGUCGUCcucgGCGCGGUcGGCCugGGCGCgGc -3'
miRNA:   3'- -CAGCGGca--UGCGCCA-CCGG--CCGCGgC- -5'
29373 5' -64.1 NC_006151.1 + 62431 0.67 0.504323
Target:  5'- aUCGUCGUGCGCc-UGGUCcGCGCCu -3'
miRNA:   3'- cAGCGGCAUGCGccACCGGcCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.