miRNA display CGI


Results 61 - 80 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 86845 0.67 0.849625
Target:  5'- aGCC-CCGcCGAGcg---CAGCGCCCGGc -3'
miRNA:   3'- -CGGcGGU-GCUCcacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 31022 0.67 0.849625
Target:  5'- cGCCGCCGCGGccc--UCGcgGCCCGGg -3'
miRNA:   3'- -CGGCGGUGCUccacaAGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 139643 0.67 0.849625
Target:  5'- cGCCGgCGCGGGGgucgcggcggGcgCGcCGCCCGa -3'
miRNA:   3'- -CGGCgGUGCUCCa---------CaaGUuGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 127797 0.67 0.848847
Target:  5'- cGCCGCCgcgcgcgggggcGCGAGGUccuugcgGUUCAcguacguggcgGCGUCgCGGc -3'
miRNA:   3'- -CGGCGG------------UGCUCCA-------CAAGU-----------UGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 120354 0.67 0.84176
Target:  5'- gGCCGggcUCGCGGGcGccuacCAGCGCCCGGa -3'
miRNA:   3'- -CGGC---GGUGCUC-Cacaa-GUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 21292 0.67 0.84176
Target:  5'- uGCCcguGCCgACGAucaccgagcGGUGgcgcgaGACGCCCGGc -3'
miRNA:   3'- -CGG---CGG-UGCU---------CCACaag---UUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 57747 0.67 0.84176
Target:  5'- gGCgCGCCGC-AGccGcUCGugGCCCGGg -3'
miRNA:   3'- -CG-GCGGUGcUCcaCaAGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 70645 0.67 0.84176
Target:  5'- gGCCGCgCGCGAGGcgcccGUccUCAcgcGCGCCgcCGGc -3'
miRNA:   3'- -CGGCG-GUGCUCCa----CA--AGU---UGCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 90094 0.67 0.84176
Target:  5'- cCCGCCGCGccgcAGGccgcggCGACGCCCa- -3'
miRNA:   3'- cGGCGGUGC----UCCacaa--GUUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 137728 0.67 0.84176
Target:  5'- cGUCGCCguACGcGGUGgcCGGCGCCgacaCGGu -3'
miRNA:   3'- -CGGCGG--UGCuCCACaaGUUGCGG----GCC- -5'
29374 3' -57.2 NC_006151.1 + 139548 0.67 0.84176
Target:  5'- gGUCGgggaGCGAGGag--CGGCGCCCGGu -3'
miRNA:   3'- -CGGCgg--UGCUCCacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 50011 0.67 0.84176
Target:  5'- cGCCGCgCGCGcGGcccGcgCGGCGCCCccGGg -3'
miRNA:   3'- -CGGCG-GUGCuCCa--CaaGUUGCGGG--CC- -5'
29374 3' -57.2 NC_006151.1 + 102680 0.67 0.84176
Target:  5'- cGCCGUggaCGCGGGG------GCGCCCGGc -3'
miRNA:   3'- -CGGCG---GUGCUCCacaaguUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 105635 0.67 0.84176
Target:  5'- cGCCGCCuaccGCGAGcUGcUCAcgcuGCGCCUGc -3'
miRNA:   3'- -CGGCGG----UGCUCcACaAGU----UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 48585 0.67 0.833712
Target:  5'- uGCCGCC-CGGGGUGcgccUCGucgUGCCUGc -3'
miRNA:   3'- -CGGCGGuGCUCCACa---AGUu--GCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 76943 0.67 0.833712
Target:  5'- -gCGCCACGAGGa---CGGCGCagaCGGc -3'
miRNA:   3'- cgGCGGUGCUCCacaaGUUGCGg--GCC- -5'
29374 3' -57.2 NC_006151.1 + 82349 0.67 0.833712
Target:  5'- aCCGCCGcCGuGGUGUaCGugcgccggACGCCgGGc -3'
miRNA:   3'- cGGCGGU-GCuCCACAaGU--------UGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 5631 0.67 0.833712
Target:  5'- cGCCGCCGCcGGGcgccgaGACcgGCCCGGc -3'
miRNA:   3'- -CGGCGGUGcUCCacaag-UUG--CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 60092 0.67 0.833712
Target:  5'- cGCCGCCGCGAacgccGGgcggCAGCgGCgCUGGa -3'
miRNA:   3'- -CGGCGGUGCU-----CCacaaGUUG-CG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 134257 0.67 0.833712
Target:  5'- uUCGCgGCGAGGUGca-GGCGauuguagcCCCGGg -3'
miRNA:   3'- cGGCGgUGCUCCACaagUUGC--------GGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.