miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 50180 0.66 0.862558
Target:  5'- gGCCgGCCGCGccGGUGUUCAuccacgaguucaucACcCCCGa -3'
miRNA:   3'- -CGG-CGGUGCu-CCACAAGU--------------UGcGGGCc -5'
29374 3' -57.2 NC_006151.1 + 93511 0.66 0.859566
Target:  5'- cGCCGCU-CGAaaaaguuGGUGUgcuucucggcgaccaUCAGCGCCaUGGg -3'
miRNA:   3'- -CGGCGGuGCU-------CCACA---------------AGUUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 97252 0.66 0.857301
Target:  5'- gGCCGCgCAuguCGGGGgcccacacGggCAGCGCCuCGGc -3'
miRNA:   3'- -CGGCG-GU---GCUCCa-------CaaGUUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 72859 0.66 0.857301
Target:  5'- uGCuCGUCgGCGAGGcgg-CGGCGCCCGu -3'
miRNA:   3'- -CG-GCGG-UGCUCCacaaGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 84356 0.66 0.857301
Target:  5'- cGCCGgcCCGCGGcGGUGaUCGcgaucgcgGCGCgCGGg -3'
miRNA:   3'- -CGGC--GGUGCU-CCACaAGU--------UGCGgGCC- -5'
29374 3' -57.2 NC_006151.1 + 86795 0.66 0.857301
Target:  5'- uCUGCCuaaaaGCGGGGccucccCGGCGCCCGGc -3'
miRNA:   3'- cGGCGG-----UGCUCCacaa--GUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 103623 0.66 0.857301
Target:  5'- cGCaCGCCgACGcGGUGgcggCGGCGCUggCGGa -3'
miRNA:   3'- -CG-GCGG-UGCuCCACaa--GUUGCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 104559 0.66 0.857301
Target:  5'- gGCCGCC-CuGGGcGcgCGGCGCgCGGa -3'
miRNA:   3'- -CGGCGGuGcUCCaCaaGUUGCGgGCC- -5'
29374 3' -57.2 NC_006151.1 + 138908 0.66 0.857301
Target:  5'- -aCGCgGCGAGcGUGcUCGcCGCCaCGGu -3'
miRNA:   3'- cgGCGgUGCUC-CACaAGUuGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 2281 0.66 0.857301
Target:  5'- gGCCGgcggggcgcCCGCGGcGGcga-CGGCGCCCGGg -3'
miRNA:   3'- -CGGC---------GGUGCU-CCacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 68261 0.66 0.857301
Target:  5'- cGCgCGCgGCGAcGGUcg-CGGCGCCgGGc -3'
miRNA:   3'- -CG-GCGgUGCU-CCAcaaGUUGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 92451 0.66 0.857301
Target:  5'- cGCUGCCGCGAcGUccUCGcgaGCCUGGg -3'
miRNA:   3'- -CGGCGGUGCUcCAcaAGUug-CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 118354 0.66 0.857301
Target:  5'- cGCgCGCCuGCGAGGcGgcgcGCGCCCGc -3'
miRNA:   3'- -CG-GCGG-UGCUCCaCaaguUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 45189 0.66 0.856542
Target:  5'- cCCGCCaccacggacggcgACGGGGUGcgCcGCGCUCGc -3'
miRNA:   3'- cGGCGG-------------UGCUCCACaaGuUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 102922 0.67 0.852719
Target:  5'- gGCgGCCGcCGAGGagcggcugcgcgcgcUGgacgCGGCGCCCGc -3'
miRNA:   3'- -CGgCGGU-GCUCC---------------ACaa--GUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 35853 0.67 0.850402
Target:  5'- cGCCGCC-CGcucuccgcgcUCGGCGCCCGGc -3'
miRNA:   3'- -CGGCGGuGCuccaca----AGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 31022 0.67 0.849625
Target:  5'- cGCCGCCGCGGccc--UCGcgGCCCGGg -3'
miRNA:   3'- -CGGCGGUGCUccacaAGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 86845 0.67 0.849625
Target:  5'- aGCC-CCGcCGAGcg---CAGCGCCCGGc -3'
miRNA:   3'- -CGGcGGU-GCUCcacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 81959 0.67 0.849625
Target:  5'- aCCGCCGCGcGGUaaaaGUaguACGgCCCGGg -3'
miRNA:   3'- cGGCGGUGCuCCA----CAaguUGC-GGGCC- -5'
29374 3' -57.2 NC_006151.1 + 54151 0.67 0.849625
Target:  5'- cGgCGCCGCgGAGGaggcuaauaaccUGUUgGGCGCCCc- -3'
miRNA:   3'- -CgGCGGUG-CUCC------------ACAAgUUGCGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.