miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 87487 0.66 0.885991
Target:  5'- aGCCGCCGCGGccgcccccGUUCAGgccgcCGCcCCGGc -3'
miRNA:   3'- -CGGCGGUGCUcca-----CAAGUU-----GCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 130348 0.66 0.885991
Target:  5'- cGCCGCgGCGucGUGgUUGACGgCCGc -3'
miRNA:   3'- -CGGCGgUGCucCACaAGUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 64100 0.66 0.885991
Target:  5'- cCCG-CACGAGaagaggUCGugGCCCGGc -3'
miRNA:   3'- cGGCgGUGCUCcaca--AGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 89553 0.66 0.885314
Target:  5'- gGCCgguggagGCCGCGAGGcugaUGggC-ACGCCCa- -3'
miRNA:   3'- -CGG-------CGGUGCUCC----ACaaGuUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 63749 0.66 0.879131
Target:  5'- gGCgCGUCgGCGGGGcGUccUCGGCGCCCc- -3'
miRNA:   3'- -CG-GCGG-UGCUCCaCA--AGUUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 15919 0.66 0.879131
Target:  5'- cGCCGCCGCcccguGAGGcGggCcuCGCCCc- -3'
miRNA:   3'- -CGGCGGUG-----CUCCaCaaGuuGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 48104 0.66 0.879131
Target:  5'- cGCCGCUcgugGCGGugcuGGUGUUuuuuucggCGGCGCUgGGg -3'
miRNA:   3'- -CGGCGG----UGCU----CCACAA--------GUUGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 53941 0.66 0.879131
Target:  5'- cGCCGCgGCGAGGgacuUGaaCcACGCCagCGGc -3'
miRNA:   3'- -CGGCGgUGCUCC----ACaaGuUGCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 56579 0.66 0.879131
Target:  5'- cGCCGCC-CGAcGGgcugGUgCGgacGCGCcCCGGc -3'
miRNA:   3'- -CGGCGGuGCU-CCa---CAaGU---UGCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 67862 0.66 0.879131
Target:  5'- aGCCGgCGcCGAGGUGgcgCGcGCGCCagcccgCGGg -3'
miRNA:   3'- -CGGCgGU-GCUCCACaa-GU-UGCGG------GCC- -5'
29374 3' -57.2 NC_006151.1 + 68560 0.66 0.879131
Target:  5'- cGCCGaCGCaGAGGUacgcGUagcUCu-CGCCCGGg -3'
miRNA:   3'- -CGGCgGUG-CUCCA----CA---AGuuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 93565 0.66 0.879131
Target:  5'- uCCGCCGCGGGGgcgggcGCGCCaaagagCGGg -3'
miRNA:   3'- cGGCGGUGCUCCacaaguUGCGG------GCC- -5'
29374 3' -57.2 NC_006151.1 + 61759 0.66 0.872059
Target:  5'- cGCgGUCGCGGGGgccgugGUgcugCGGCGCgaggCCGGc -3'
miRNA:   3'- -CGgCGGUGCUCCa-----CAa---GUUGCG----GGCC- -5'
29374 3' -57.2 NC_006151.1 + 66774 0.66 0.872059
Target:  5'- gGCCGCCcucgggacgGCGGcGGcGgcggCGGgGCCCGGg -3'
miRNA:   3'- -CGGCGG---------UGCU-CCaCaa--GUUgCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 87189 0.66 0.872059
Target:  5'- cGCCGCCGC-AGcUGcugc-CGCCCGGg -3'
miRNA:   3'- -CGGCGGUGcUCcACaaguuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 127402 0.66 0.87134
Target:  5'- gGCCGagucgacgggagcCCGCGGGGUcgccUCGGCGCUCGu -3'
miRNA:   3'- -CGGC-------------GGUGCUCCAca--AGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 39115 0.66 0.87062
Target:  5'- cGCCGagcCCGcCGAGGgcgccccGCGCCCGGc -3'
miRNA:   3'- -CGGC---GGU-GCUCCacaagu-UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 113178 0.66 0.864781
Target:  5'- cGUgGCCACGGGGgagccCAACGCgcagaCGGa -3'
miRNA:   3'- -CGgCGGUGCUCCacaa-GUUGCGg----GCC- -5'
29374 3' -57.2 NC_006151.1 + 17560 0.66 0.864781
Target:  5'- cGCCucgcCCACGaAGGcgGggauGCGCCCGGa -3'
miRNA:   3'- -CGGc---GGUGC-UCCa-CaaguUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 81247 0.66 0.864781
Target:  5'- cGCCcCCGCGcAGGggcagGgcgagCAGCGCCuCGGc -3'
miRNA:   3'- -CGGcGGUGC-UCCa----Caa---GUUGCGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.