miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 19761 0.66 0.885991
Target:  5'- gGUCGCCGuCGAGGUcaUCGuCGCCgGc -3'
miRNA:   3'- -CGGCGGU-GCUCCAcaAGUuGCGGgCc -5'
29374 3' -57.2 NC_006151.1 + 20141 0.74 0.449883
Target:  5'- gGgCGCCGCGGGGgcgGcgCGuggaccgccgggccGCGCCCGGg -3'
miRNA:   3'- -CgGCGGUGCUCCa--CaaGU--------------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 21292 0.67 0.84176
Target:  5'- uGCCcguGCCgACGAucaccgagcGGUGgcgcgaGACGCCCGGc -3'
miRNA:   3'- -CGG---CGG-UGCU---------CCACaag---UUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 22244 0.68 0.772863
Target:  5'- aGCUGCCACGAcucGGUGUaCGgguACGCgggCGGg -3'
miRNA:   3'- -CGGCGGUGCU---CCACAaGU---UGCGg--GCC- -5'
29374 3' -57.2 NC_006151.1 + 24522 0.68 0.763621
Target:  5'- cGCCGCCACGuug----CAGCGCgCGGc -3'
miRNA:   3'- -CGGCGGUGCuccacaaGUUGCGgGCC- -5'
29374 3' -57.2 NC_006151.1 + 29207 0.69 0.735256
Target:  5'- gGgCGCgGCGGGGUGgggaugggUCAcCGCCgGGu -3'
miRNA:   3'- -CgGCGgUGCUCCACa-------AGUuGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 31022 0.67 0.849625
Target:  5'- cGCCGCCGCGGccc--UCGcgGCCCGGg -3'
miRNA:   3'- -CGGCGGUGCUccacaAGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 35412 0.67 0.849625
Target:  5'- gGCCGCCGCGGGGgccGggCA-UGCaaaUGGu -3'
miRNA:   3'- -CGGCGGUGCUCCa--CaaGUuGCGg--GCC- -5'
29374 3' -57.2 NC_006151.1 + 35853 0.67 0.850402
Target:  5'- cGCCGCC-CGcucuccgcgcUCGGCGCCCGGc -3'
miRNA:   3'- -CGGCGGuGCuccaca----AGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 35977 0.71 0.636407
Target:  5'- cGCCGCCGCggccGAGGaagaGggCAucGCGUCCGGc -3'
miRNA:   3'- -CGGCGGUG----CUCCa---CaaGU--UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 36614 0.78 0.288081
Target:  5'- cCCGCCGCcGGGccgGUcUCGGCGCCCGGc -3'
miRNA:   3'- cGGCGGUGcUCCa--CA-AGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 36721 0.85 0.108965
Target:  5'- cGCCGCCGCGAGGcgGcUCGauccucggccgcuugGCGCCCGGa -3'
miRNA:   3'- -CGGCGGUGCUCCa-CaAGU---------------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 38300 0.7 0.656458
Target:  5'- gGCCGCCGCGcGGcccgGgcccgCGgagcccGCGCCCGGc -3'
miRNA:   3'- -CGGCGGUGCuCCa---Caa---GU------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 38903 0.71 0.626373
Target:  5'- cCCGCC-CGAGGUGgcCcGCGCCUcguGGa -3'
miRNA:   3'- cGGCGGuGCUCCACaaGuUGCGGG---CC- -5'
29374 3' -57.2 NC_006151.1 + 39115 0.66 0.87062
Target:  5'- cGCCGagcCCGcCGAGGgcgccccGCGCCCGGc -3'
miRNA:   3'- -CGGC---GGU-GCUCCacaagu-UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 39602 0.69 0.758022
Target:  5'- uGCCGCCAgGAcaacgugcgcuacacGGUGagCAcccGCGCCgGGc -3'
miRNA:   3'- -CGGCGGUgCU---------------CCACaaGU---UGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 40577 0.66 0.892635
Target:  5'- gGCCGCgGCgGAGG-GcUCGGCGgcggaggaucguCCCGGu -3'
miRNA:   3'- -CGGCGgUG-CUCCaCaAGUUGC------------GGGCC- -5'
29374 3' -57.2 NC_006151.1 + 42665 0.71 0.626373
Target:  5'- cCCGCCGCGGGGaUGUgu-GCGUgcgagCCGGa -3'
miRNA:   3'- cGGCGGUGCUCC-ACAaguUGCG-----GGCC- -5'
29374 3' -57.2 NC_006151.1 + 45189 0.66 0.856542
Target:  5'- cCCGCCaccacggacggcgACGGGGUGcgCcGCGCUCGc -3'
miRNA:   3'- cGGCGG-------------UGCUCCACaaGuUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 45737 0.67 0.849625
Target:  5'- aCCGCC--GAGGcuucCAGCGCCUGGg -3'
miRNA:   3'- cGGCGGugCUCCacaaGUUGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.