miRNA display CGI


Results 41 - 60 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 46110 0.68 0.790977
Target:  5'- -gCGCCACGAGGaggccgaaGggCAGgGCuCCGGg -3'
miRNA:   3'- cgGCGGUGCUCCa-------CaaGUUgCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 48104 0.66 0.879131
Target:  5'- cGCCGCUcgugGCGGugcuGGUGUUuuuuucggCGGCGCUgGGg -3'
miRNA:   3'- -CGGCGG----UGCU----CCACAA--------GUUGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 48351 0.71 0.596324
Target:  5'- cGCCGUCACGAGcGUGgUCGugaaGCCCu- -3'
miRNA:   3'- -CGGCGGUGCUC-CACaAGUug--CGGGcc -5'
29374 3' -57.2 NC_006151.1 + 48585 0.67 0.833712
Target:  5'- uGCCGCC-CGGGGUGcgccUCGucgUGCCUGc -3'
miRNA:   3'- -CGGCGGuGCUCCACa---AGUu--GCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 48946 0.69 0.748604
Target:  5'- cCCGCgCGCGAGGacgUGUucgccuggacgcgccUCAcgGCGCCCGa -3'
miRNA:   3'- cGGCG-GUGCUCC---ACA---------------AGU--UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 49034 0.7 0.696271
Target:  5'- gGCCGggccaggcCCACGGGcUGgccuUCAGCGUCCGGc -3'
miRNA:   3'- -CGGC--------GGUGCUCcACa---AGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 49156 0.74 0.470763
Target:  5'- gGCUGCCugGAGGccUGggCG-CGCCgCGGg -3'
miRNA:   3'- -CGGCGGugCUCC--ACaaGUuGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 49295 0.66 0.892635
Target:  5'- cCCGCCccaaGCu-GGUGUUCAugcucugggGCGCCCa- -3'
miRNA:   3'- cGGCGG----UGcuCCACAAGU---------UGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 49360 0.71 0.620354
Target:  5'- cGCCGCCACaAGGUGcucaccUUCAGCcauccgucgccgcugGCCCGc -3'
miRNA:   3'- -CGGCGGUGcUCCAC------AAGUUG---------------CGGGCc -5'
29374 3' -57.2 NC_006151.1 + 50011 0.67 0.84176
Target:  5'- cGCCGCgCGCGcGGcccGcgCGGCGCCCccGGg -3'
miRNA:   3'- -CGGCG-GUGCuCCa--CaaGUUGCGGG--CC- -5'
29374 3' -57.2 NC_006151.1 + 50180 0.66 0.862558
Target:  5'- gGCCgGCCGCGccGGUGUUCAuccacgaguucaucACcCCCGa -3'
miRNA:   3'- -CGG-CGGUGCu-CCACAAGU--------------UGcGGGCc -5'
29374 3' -57.2 NC_006151.1 + 50616 0.68 0.799831
Target:  5'- cGCCGCCGCGgcAGcGUGc---ACGCCuCGGc -3'
miRNA:   3'- -CGGCGGUGC--UC-CACaaguUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 50688 0.68 0.772863
Target:  5'- cGCCGCCGCGGcagcgUCcACGCCuCGGc -3'
miRNA:   3'- -CGGCGGUGCUccacaAGuUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 53941 0.66 0.879131
Target:  5'- cGCCGCgGCGAGGgacuUGaaCcACGCCagCGGc -3'
miRNA:   3'- -CGGCGgUGCUCC----ACaaGuUGCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 54151 0.67 0.849625
Target:  5'- cGgCGCCGCgGAGGaggcuaauaaccUGUUgGGCGCCCc- -3'
miRNA:   3'- -CgGCGGUG-CUCC------------ACAAgUUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 54355 0.75 0.383939
Target:  5'- gGCgCGCUACGAGGa---CGugGCCCGGg -3'
miRNA:   3'- -CG-GCGGUGCUCCacaaGUugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 55455 0.71 0.595325
Target:  5'- cGCCGCCGgccccgcCGGGGgGcgC-GCGCCCGGc -3'
miRNA:   3'- -CGGCGGU-------GCUCCaCaaGuUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 55517 0.67 0.833712
Target:  5'- uCgGCCACGAGGUcaUCGacaucacgcGCGCCaUGGg -3'
miRNA:   3'- cGgCGGUGCUCCAcaAGU---------UGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 55792 0.69 0.725617
Target:  5'- aCCaGCCAgGAGGUGUac--CGCUCGGa -3'
miRNA:   3'- cGG-CGGUgCUCCACAaguuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 55967 0.74 0.426038
Target:  5'- cGCgGCUgguguGCGAGGUGcgCGAggUGCCCGGg -3'
miRNA:   3'- -CGgCGG-----UGCUCCACaaGUU--GCGGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.