miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 96228 0.7 0.670453
Target:  5'- gGCCGCgGCGAGGcgcacaaagaacUGguccauggccucgCAGCGCCCGu -3'
miRNA:   3'- -CGGCGgUGCUCC------------ACaa-----------GUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 100165 0.7 0.675439
Target:  5'- cGCCGCCugGAGGa---CAugGCCacccacaCGGg -3'
miRNA:   3'- -CGGCGGugCUCCacaaGUugCGG-------GCC- -5'
29374 3' -57.2 NC_006151.1 + 138076 0.7 0.676435
Target:  5'- cGCgGaaCCGCGAGGccUUCuuCGCCCGGc -3'
miRNA:   3'- -CGgC--GGUGCUCCacAAGuuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 100877 0.7 0.686375
Target:  5'- cGCCGugaaCCugGAGGUGcu--GCGCCgCGGc -3'
miRNA:   3'- -CGGC----GGugCUCCACaaguUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 96411 0.7 0.686375
Target:  5'- gGCCGCCaccGCGGGGa--UCAGCGCgagcuCCGGc -3'
miRNA:   3'- -CGGCGG---UGCUCCacaAGUUGCG-----GGCC- -5'
29374 3' -57.2 NC_006151.1 + 123931 0.7 0.686375
Target:  5'- gGCCGCCuCGGccucgcCGACGCCCGGg -3'
miRNA:   3'- -CGGCGGuGCUccacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 133782 0.7 0.686375
Target:  5'- cGCCGCCccGCGGGGgaggcGUgcagCAuccgggugcACGUCCGGg -3'
miRNA:   3'- -CGGCGG--UGCUCCa----CAa---GU---------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 49034 0.7 0.696271
Target:  5'- gGCCGggccaggcCCACGGGcUGgccuUCAGCGUCCGGc -3'
miRNA:   3'- -CGGC--------GGUGCUCcACa---AGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 6254 0.7 0.696271
Target:  5'- uGCCGCCGuCGGGGccGgacgCGAUGCCCu- -3'
miRNA:   3'- -CGGCGGU-GCUCCa-Caa--GUUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 91488 0.69 0.706116
Target:  5'- cGCCGCgCACGcuGGcGUgcacCAGCaGCCCGGc -3'
miRNA:   3'- -CGGCG-GUGCu-CCaCAa---GUUG-CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 106794 0.69 0.715901
Target:  5'- gGCCGCgGCGGcGGUGcucgUCGGgGCCCc- -3'
miRNA:   3'- -CGGCGgUGCU-CCACa---AGUUgCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 122672 0.69 0.715901
Target:  5'- cGCCGCgC-CGAGGUGcgcgCGGCGgCCGu -3'
miRNA:   3'- -CGGCG-GuGCUCCACaa--GUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 97482 0.69 0.725617
Target:  5'- aCCGCCACGuGGacGcgCAGCGCCucgCGGc -3'
miRNA:   3'- cGGCGGUGCuCCa-CaaGUUGCGG---GCC- -5'
29374 3' -57.2 NC_006151.1 + 55792 0.69 0.725617
Target:  5'- aCCaGCCAgGAGGUGUac--CGCUCGGa -3'
miRNA:   3'- cGG-CGGUgCUCCACAaguuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 86096 0.69 0.725617
Target:  5'- cGCCGCCAUGGGGcccGUgu-ACGUguCCGGc -3'
miRNA:   3'- -CGGCGGUGCUCCa--CAaguUGCG--GGCC- -5'
29374 3' -57.2 NC_006151.1 + 89884 0.69 0.725617
Target:  5'- cGCCGCUcgggcuCGGcGGUGgggUCGGCGUCCGc -3'
miRNA:   3'- -CGGCGGu-----GCU-CCACa--AGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 61846 0.69 0.734296
Target:  5'- gGCCGCCcCGGGGacccugaUGcUCGgcgcgucuGCGCCUGGa -3'
miRNA:   3'- -CGGCGGuGCUCC-------ACaAGU--------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 63437 0.69 0.735256
Target:  5'- cGUCGCacaGCGAGGccagGUcgAGCGUCCGGu -3'
miRNA:   3'- -CGGCGg--UGCUCCa---CAagUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 29207 0.69 0.735256
Target:  5'- gGgCGCgGCGGGGUGgggaugggUCAcCGCCgGGu -3'
miRNA:   3'- -CgGCGgUGCUCCACa-------AGUuGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 93456 0.69 0.735256
Target:  5'- cGCCGCCGCGGGGcgcuacaggucGUUCAcgACGgucCCCGu -3'
miRNA:   3'- -CGGCGGUGCUCCa----------CAAGU--UGC---GGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.