Results 41 - 60 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29374 | 3' | -57.2 | NC_006151.1 | + | 18556 | 0.66 | 0.892635 |
Target: 5'- aCgGCCGCGAGGc------CGCCCGGc -3' miRNA: 3'- cGgCGGUGCUCCacaaguuGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 64100 | 0.66 | 0.885991 |
Target: 5'- cCCG-CACGAGaagaggUCGugGCCCGGc -3' miRNA: 3'- cGGCgGUGCUCcaca--AGUugCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 68560 | 0.66 | 0.879131 |
Target: 5'- cGCCGaCGCaGAGGUacgcGUagcUCu-CGCCCGGg -3' miRNA: 3'- -CGGCgGUG-CUCCA----CA---AGuuGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 93565 | 0.66 | 0.879131 |
Target: 5'- uCCGCCGCGGGGgcgggcGCGCCaaagagCGGg -3' miRNA: 3'- cGGCGGUGCUCCacaaguUGCGG------GCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 89553 | 0.66 | 0.885314 |
Target: 5'- gGCCgguggagGCCGCGAGGcugaUGggC-ACGCCCa- -3' miRNA: 3'- -CGG-------CGGUGCUCC----ACaaGuUGCGGGcc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 17160 | 0.66 | 0.885991 |
Target: 5'- gGUCGCa--GAGGUcggCGGCGCCCaGGa -3' miRNA: 3'- -CGGCGgugCUCCAcaaGUUGCGGG-CC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 19761 | 0.66 | 0.885991 |
Target: 5'- gGUCGCCGuCGAGGUcaUCGuCGCCgGc -3' miRNA: 3'- -CGGCGGU-GCUCCAcaAGUuGCGGgCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 99234 | 0.66 | 0.885991 |
Target: 5'- cGCCGCUGC-AGGUcGUggaGGCGCUCGu -3' miRNA: 3'- -CGGCGGUGcUCCA-CAag-UUGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 73377 | 0.66 | 0.885991 |
Target: 5'- uCCGUCACGGGGgcgcgCAGCGCggCCGc -3' miRNA: 3'- cGGCGGUGCUCCacaa-GUUGCG--GGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 140205 | 0.66 | 0.885991 |
Target: 5'- gGCCaCCGCGGGGgcgGUgcugCAgaaccuGCGCCUGa -3' miRNA: 3'- -CGGcGGUGCUCCa--CAa---GU------UGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 10422 | 0.66 | 0.885991 |
Target: 5'- -aCGCCGCG-GGUGggcCGAgGCCggCGGg -3' miRNA: 3'- cgGCGGUGCuCCACaa-GUUgCGG--GCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 61307 | 0.66 | 0.885991 |
Target: 5'- gGCgCGUCGCGcugcAGGUccaGggaGACGCCCGGc -3' miRNA: 3'- -CG-GCGGUGC----UCCA---CaagUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 87487 | 0.66 | 0.885991 |
Target: 5'- aGCCGCCGCGGccgcccccGUUCAGgccgcCGCcCCGGc -3' miRNA: 3'- -CGGCGGUGCUcca-----CAAGUU-----GCG-GGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 130348 | 0.66 | 0.885991 |
Target: 5'- cGCCGCgGCGucGUGgUUGACGgCCGc -3' miRNA: 3'- -CGGCGgUGCucCACaAGUUGCgGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 81959 | 0.67 | 0.849625 |
Target: 5'- aCCGCCGCGcGGUaaaaGUaguACGgCCCGGg -3' miRNA: 3'- cGGCGGUGCuCCA----CAaguUGC-GGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 86845 | 0.67 | 0.849625 |
Target: 5'- aGCC-CCGcCGAGcg---CAGCGCCCGGc -3' miRNA: 3'- -CGGcGGU-GCUCcacaaGUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 31022 | 0.67 | 0.849625 |
Target: 5'- cGCCGCCGCGGccc--UCGcgGCCCGGg -3' miRNA: 3'- -CGGCGGUGCUccacaAGUugCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 139643 | 0.67 | 0.849625 |
Target: 5'- cGCCGgCGCGGGGgucgcggcggGcgCGcCGCCCGa -3' miRNA: 3'- -CGGCgGUGCUCCa---------CaaGUuGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 35853 | 0.67 | 0.850402 |
Target: 5'- cGCCGCC-CGcucuccgcgcUCGGCGCCCGGc -3' miRNA: 3'- -CGGCGGuGCuccaca----AGUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 54151 | 0.67 | 0.849625 |
Target: 5'- cGgCGCCGCgGAGGaggcuaauaaccUGUUgGGCGCCCc- -3' miRNA: 3'- -CgGCGGUG-CUCC------------ACAAgUUGCGGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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