miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 49295 0.66 0.892635
Target:  5'- cCCGCCccaaGCu-GGUGUUCAugcucugggGCGCCCa- -3'
miRNA:   3'- cGGCGG----UGcuCCACAAGU---------UGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 78710 0.66 0.892635
Target:  5'- cGUCGCCGCGA------CGGCGCCCGu -3'
miRNA:   3'- -CGGCGGUGCUccacaaGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 82021 0.66 0.892635
Target:  5'- cGCCGCCgacagcuggGCGAGGUagUCGuCGCUCu- -3'
miRNA:   3'- -CGGCGG---------UGCUCCAcaAGUuGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 91259 0.66 0.892635
Target:  5'- cCCGUCGCGAGG------ACGCCCGc -3'
miRNA:   3'- cGGCGGUGCUCCacaaguUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 120753 0.66 0.892635
Target:  5'- gGCCGCguCAUGgccuGGGUG--CGGCGCCCGc -3'
miRNA:   3'- -CGGCG--GUGC----UCCACaaGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 130348 0.66 0.885991
Target:  5'- cGCCGCgGCGucGUGgUUGACGgCCGc -3'
miRNA:   3'- -CGGCGgUGCucCACaAGUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 87487 0.66 0.885991
Target:  5'- aGCCGCCGCGGccgcccccGUUCAGgccgcCGCcCCGGc -3'
miRNA:   3'- -CGGCGGUGCUcca-----CAAGUU-----GCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 53941 0.66 0.879131
Target:  5'- cGCCGCgGCGAGGgacuUGaaCcACGCCagCGGc -3'
miRNA:   3'- -CGGCGgUGCUCC----ACaaGuUGCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 56579 0.66 0.879131
Target:  5'- cGCCGCC-CGAcGGgcugGUgCGgacGCGCcCCGGc -3'
miRNA:   3'- -CGGCGGuGCU-CCa---CAaGU---UGCG-GGCC- -5'
29374 3' -57.2 NC_006151.1 + 67862 0.66 0.879131
Target:  5'- aGCCGgCGcCGAGGUGgcgCGcGCGCCagcccgCGGg -3'
miRNA:   3'- -CGGCgGU-GCUCCACaa-GU-UGCGG------GCC- -5'
29374 3' -57.2 NC_006151.1 + 68560 0.66 0.879131
Target:  5'- cGCCGaCGCaGAGGUacgcGUagcUCu-CGCCCGGg -3'
miRNA:   3'- -CGGCgGUG-CUCCA----CA---AGuuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 93565 0.66 0.879131
Target:  5'- uCCGCCGCGGGGgcgggcGCGCCaaagagCGGg -3'
miRNA:   3'- cGGCGGUGCUCCacaaguUGCGG------GCC- -5'
29374 3' -57.2 NC_006151.1 + 89553 0.66 0.885314
Target:  5'- gGCCgguggagGCCGCGAGGcugaUGggC-ACGCCCa- -3'
miRNA:   3'- -CGG-------CGGUGCUCC----ACaaGuUGCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 17160 0.66 0.885991
Target:  5'- gGUCGCa--GAGGUcggCGGCGCCCaGGa -3'
miRNA:   3'- -CGGCGgugCUCCAcaaGUUGCGGG-CC- -5'
29374 3' -57.2 NC_006151.1 + 19761 0.66 0.885991
Target:  5'- gGUCGCCGuCGAGGUcaUCGuCGCCgGc -3'
miRNA:   3'- -CGGCGGU-GCUCCAcaAGUuGCGGgCc -5'
29374 3' -57.2 NC_006151.1 + 99234 0.66 0.885991
Target:  5'- cGCCGCUGC-AGGUcGUggaGGCGCUCGu -3'
miRNA:   3'- -CGGCGGUGcUCCA-CAag-UUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 73377 0.66 0.885991
Target:  5'- uCCGUCACGGGGgcgcgCAGCGCggCCGc -3'
miRNA:   3'- cGGCGGUGCUCCacaa-GUUGCG--GGCc -5'
29374 3' -57.2 NC_006151.1 + 140205 0.66 0.885991
Target:  5'- gGCCaCCGCGGGGgcgGUgcugCAgaaccuGCGCCUGa -3'
miRNA:   3'- -CGGcGGUGCUCCa--CAa---GU------UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 10422 0.66 0.885991
Target:  5'- -aCGCCGCG-GGUGggcCGAgGCCggCGGg -3'
miRNA:   3'- cgGCGGUGCuCCACaa-GUUgCGG--GCC- -5'
29374 3' -57.2 NC_006151.1 + 61307 0.66 0.885991
Target:  5'- gGCgCGUCGCGcugcAGGUccaGggaGACGCCCGGc -3'
miRNA:   3'- -CG-GCGGUGC----UCCA---CaagUUGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.