miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 113097 0.72 0.576406
Target:  5'- cGCCGCCAcCGGGGg---CGGgGCCgCGGa -3'
miRNA:   3'- -CGGCGGU-GCUCCacaaGUUgCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 55455 0.71 0.595325
Target:  5'- cGCCGCCGgccccgcCGGGGgGcgC-GCGCCCGGc -3'
miRNA:   3'- -CGGCGGU-------GCUCCaCaaGuUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 79686 0.71 0.596324
Target:  5'- cGCCGCCGCGGGGaccgCAgccgaaACGCcgCCGGa -3'
miRNA:   3'- -CGGCGGUGCUCCacaaGU------UGCG--GGCC- -5'
29374 3' -57.2 NC_006151.1 + 48351 0.71 0.596324
Target:  5'- cGCCGUCACGAGcGUGgUCGugaaGCCCu- -3'
miRNA:   3'- -CGGCGGUGCUC-CACaAGUug--CGGGcc -5'
29374 3' -57.2 NC_006151.1 + 98202 0.71 0.596324
Target:  5'- cGCCG-CGCGGGGUcgaGUgcgcggCGGCGCCCGc -3'
miRNA:   3'- -CGGCgGUGCUCCA---CAa-----GUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 3446 0.71 0.605323
Target:  5'- aGCCGCCgucgggcGCGGGGUGcUCGggcauGgGCCCGa -3'
miRNA:   3'- -CGGCGG-------UGCUCCACaAGU-----UgCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 84628 0.71 0.606324
Target:  5'- gGCCGCCGCGGcGcUGgaCAACGCCaUGGc -3'
miRNA:   3'- -CGGCGGUGCUcC-ACaaGUUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 86733 0.71 0.606324
Target:  5'- cGCCGCCGCGAGGc---CGGCGUgCGcGg -3'
miRNA:   3'- -CGGCGGUGCUCCacaaGUUGCGgGC-C- -5'
29374 3' -57.2 NC_006151.1 + 90725 0.71 0.616343
Target:  5'- gGCgGCgGCGAcGGUGgcggCGGCGCCCucGGg -3'
miRNA:   3'- -CGgCGgUGCU-CCACaa--GUUGCGGG--CC- -5'
29374 3' -57.2 NC_006151.1 + 49360 0.71 0.620354
Target:  5'- cGCCGCCACaAGGUGcucaccUUCAGCcauccgucgccgcugGCCCGc -3'
miRNA:   3'- -CGGCGGUGcUCCAC------AAGUUG---------------CGGGCc -5'
29374 3' -57.2 NC_006151.1 + 19638 0.71 0.626373
Target:  5'- cGUCGCCGCGcgcgucgaGGGUGaagUUGGCGCCCucGGa -3'
miRNA:   3'- -CGGCGGUGC--------UCCACa--AGUUGCGGG--CC- -5'
29374 3' -57.2 NC_006151.1 + 99576 0.71 0.626373
Target:  5'- cGCUGCUgcGCGAGGUGg-CGGCGgCCGa -3'
miRNA:   3'- -CGGCGG--UGCUCCACaaGUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 38903 0.71 0.626373
Target:  5'- cCCGCC-CGAGGUGgcCcGCGCCUcguGGa -3'
miRNA:   3'- cGGCGGuGCUCCACaaGuUGCGGG---CC- -5'
29374 3' -57.2 NC_006151.1 + 42665 0.71 0.626373
Target:  5'- cCCGCCGCGGGGaUGUgu-GCGUgcgagCCGGa -3'
miRNA:   3'- cGGCGGUGCUCC-ACAaguUGCG-----GGCC- -5'
29374 3' -57.2 NC_006151.1 + 35977 0.71 0.636407
Target:  5'- cGCCGCCGCggccGAGGaagaGggCAucGCGUCCGGc -3'
miRNA:   3'- -CGGCGGUG----CUCCa---CaaGU--UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 108152 0.7 0.646438
Target:  5'- cGCCaaGCCGCGGGGUGcUCccccCGCCCc- -3'
miRNA:   3'- -CGG--CGGUGCUCCACaAGuu--GCGGGcc -5'
29374 3' -57.2 NC_006151.1 + 19020 0.7 0.656458
Target:  5'- cGCgCGCCgGCGAGGUGaagCugcACGCCgGGu -3'
miRNA:   3'- -CG-GCGG-UGCUCCACaa-Gu--UGCGGgCC- -5'
29374 3' -57.2 NC_006151.1 + 106654 0.7 0.656458
Target:  5'- cGCCGCggcgcacgugCGCGAGGccg-CGGCGCUCGGc -3'
miRNA:   3'- -CGGCG----------GUGCUCCacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 38300 0.7 0.656458
Target:  5'- gGCCGCCGCGcGGcccgGgcccgCGgagcccGCGCCCGGc -3'
miRNA:   3'- -CGGCGGUGCuCCa---Caa---GU------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 17078 0.7 0.66646
Target:  5'- gGCCGCCGCcGGGUcaggCGcGCGCCCGu -3'
miRNA:   3'- -CGGCGGUGcUCCAcaa-GU-UGCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.