miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 129526 0.69 0.754267
Target:  5'- uGCCGCCgACGGGG-Gg-----GCCCGGg -3'
miRNA:   3'- -CGGCGG-UGCUCCaCaaguugCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 129185 0.67 0.817095
Target:  5'- gGCCGCCACGGccgccgUCAGCaccucCCCGGg -3'
miRNA:   3'- -CGGCGGUGCUccaca-AGUUGc----GGGCC- -5'
29374 3' -57.2 NC_006151.1 + 128017 0.67 0.817095
Target:  5'- gGCgGCgGCGAcGGcGUcugCGACGCCCGcGg -3'
miRNA:   3'- -CGgCGgUGCU-CCaCAa--GUUGCGGGC-C- -5'
29374 3' -57.2 NC_006151.1 + 127797 0.67 0.848847
Target:  5'- cGCCGCCgcgcgcgggggcGCGAGGUccuugcgGUUCAcguacguggcgGCGUCgCGGc -3'
miRNA:   3'- -CGGCGG------------UGCUCCA-------CAAGU-----------UGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 127402 0.66 0.87134
Target:  5'- gGCCGagucgacgggagcCCGCGGGGUcgccUCGGCGCUCGu -3'
miRNA:   3'- -CGGC-------------GGUGCUCCAca--AGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 125079 0.68 0.80854
Target:  5'- gGCCggcgacagGCC-CGAGGUGUaCcuCGCCCGcGg -3'
miRNA:   3'- -CGG--------CGGuGCUCCACAaGuuGCGGGC-C- -5'
29374 3' -57.2 NC_006151.1 + 123931 0.7 0.686375
Target:  5'- gGCCGCCuCGGccucgcCGACGCCCGGg -3'
miRNA:   3'- -CGGCGGuGCUccacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 122973 0.68 0.80854
Target:  5'- cGCCgGCgACGGGGgcgUCGGCgacgaagacggGCCCGGc -3'
miRNA:   3'- -CGG-CGgUGCUCCacaAGUUG-----------CGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 122672 0.69 0.715901
Target:  5'- cGCCGCgC-CGAGGUGcgcgCGGCGgCCGu -3'
miRNA:   3'- -CGGCG-GuGCUCCACaa--GUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 120809 0.79 0.256562
Target:  5'- cGCCGCgCGCGAGGUGcUgGACGCgCCGc -3'
miRNA:   3'- -CGGCG-GUGCUCCACaAgUUGCG-GGCc -5'
29374 3' -57.2 NC_006151.1 + 120753 0.66 0.892635
Target:  5'- gGCCGCguCAUGgccuGGGUG--CGGCGCCCGc -3'
miRNA:   3'- -CGGCG--GUGC----UCCACaaGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 120354 0.67 0.84176
Target:  5'- gGCCGggcUCGCGGGcGccuacCAGCGCCCGGa -3'
miRNA:   3'- -CGGC---GGUGCUC-Cacaa-GUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 120112 0.72 0.566501
Target:  5'- cGCCGCCGCGuGGUGgaC-AUGCUcaaCGGg -3'
miRNA:   3'- -CGGCGGUGCuCCACaaGuUGCGG---GCC- -5'
29374 3' -57.2 NC_006151.1 + 118354 0.66 0.857301
Target:  5'- cGCgCGCCuGCGAGGcGgcgcGCGCCCGc -3'
miRNA:   3'- -CG-GCGG-UGCUCCaCaaguUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 118202 0.69 0.754267
Target:  5'- cGCCgGgCACGuggccguGGUGgcgGGCGCCCGGa -3'
miRNA:   3'- -CGG-CgGUGCu------CCACaagUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 117731 0.68 0.767332
Target:  5'- cGCCGCCAUcgcucgucccacgcgGAGGUGcgaAGCGCCgGc -3'
miRNA:   3'- -CGGCGGUG---------------CUCCACaagUUGCGGgCc -5'
29374 3' -57.2 NC_006151.1 + 117281 0.69 0.744809
Target:  5'- cGCCGCCgacagcgcgcgcGCGAGcUGcUCGGCGCUCGc -3'
miRNA:   3'- -CGGCGG------------UGCUCcACaAGUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 116549 0.69 0.754267
Target:  5'- gGCCGCCGCG-GuUGa--AGCGCCCGu -3'
miRNA:   3'- -CGGCGGUGCuCcACaagUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 115678 0.72 0.556641
Target:  5'- gGCCGCCACGGGGaggcaggGgagCAgcccguuggccACGCCCGu -3'
miRNA:   3'- -CGGCGGUGCUCCa------Caa-GU-----------UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 113178 0.66 0.864781
Target:  5'- cGUgGCCACGGGGgagccCAACGCgcagaCGGa -3'
miRNA:   3'- -CGgCGGUGCUCCacaa-GUUGCGg----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.