miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 3' -57.2 NC_006151.1 + 140205 0.66 0.885991
Target:  5'- gGCCaCCGCGGGGgcgGUgcugCAgaaccuGCGCCUGa -3'
miRNA:   3'- -CGGcGGUGCUCCa--CAa---GU------UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 139643 0.67 0.849625
Target:  5'- cGCCGgCGCGGGGgucgcggcggGcgCGcCGCCCGa -3'
miRNA:   3'- -CGGCgGUGCUCCa---------CaaGUuGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 139548 0.67 0.84176
Target:  5'- gGUCGgggaGCGAGGag--CGGCGCCCGGu -3'
miRNA:   3'- -CGGCgg--UGCUCCacaaGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 138908 0.66 0.857301
Target:  5'- -aCGCgGCGAGcGUGcUCGcCGCCaCGGu -3'
miRNA:   3'- cgGCGgUGCUC-CACaAGUuGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 138721 0.66 0.892635
Target:  5'- cGCCGCgCGCGGGucGUGUaCGcGCGCCgCGa -3'
miRNA:   3'- -CGGCG-GUGCUC--CACAaGU-UGCGG-GCc -5'
29374 3' -57.2 NC_006151.1 + 138628 0.68 0.794535
Target:  5'- cGCCGCCGgGGGcGcGccggacugggaggccUUCAACGCCaCGGc -3'
miRNA:   3'- -CGGCGGUgCUC-CaC---------------AAGUUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 138076 0.7 0.676435
Target:  5'- cGCgGaaCCGCGAGGccUUCuuCGCCCGGc -3'
miRNA:   3'- -CGgC--GGUGCUCCacAAGuuGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 137728 0.67 0.84176
Target:  5'- cGUCGCCguACGcGGUGgcCGGCGCCgacaCGGu -3'
miRNA:   3'- -CGGCGG--UGCuCCACaaGUUGCGG----GCC- -5'
29374 3' -57.2 NC_006151.1 + 137427 0.69 0.735256
Target:  5'- cGCCGCCGCGGGGUccgccUCcGCGgCCu- -3'
miRNA:   3'- -CGGCGGUGCUCCAca---AGuUGCgGGcc -5'
29374 3' -57.2 NC_006151.1 + 137312 0.72 0.576406
Target:  5'- uCCGCCGCGcGGUGcUCGacGCGCUCGc -3'
miRNA:   3'- cGGCGGUGCuCCACaAGU--UGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 137197 1.11 0.001756
Target:  5'- aGCCGCCACGAGGUGUUCAACGCCCGGc -3'
miRNA:   3'- -CGGCGGUGCUCCACAAGUUGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 135189 0.68 0.763621
Target:  5'- uGCCGCCGCcGGGccaGUccCAGCGUCCGc -3'
miRNA:   3'- -CGGCGGUGcUCCa--CAa-GUUGCGGGCc -5'
29374 3' -57.2 NC_006151.1 + 134257 0.67 0.833712
Target:  5'- uUCGCgGCGAGGUGca-GGCGauuguagcCCCGGg -3'
miRNA:   3'- cGGCGgUGCUCCACaagUUGC--------GGGCC- -5'
29374 3' -57.2 NC_006151.1 + 133782 0.7 0.686375
Target:  5'- cGCCGCCccGCGGGGgaggcGUgcagCAuccgggugcACGUCCGGg -3'
miRNA:   3'- -CGGCGG--UGCUCCa----CAa---GU---------UGCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 133617 0.67 0.825488
Target:  5'- gGgCGUCugGGGGUcg-CGGCGgCCGGg -3'
miRNA:   3'- -CgGCGGugCUCCAcaaGUUGCgGGCC- -5'
29374 3' -57.2 NC_006151.1 + 131118 0.68 0.763621
Target:  5'- gGCCGCgGCGcGGGaGgccgCGGCGCCgCGGc -3'
miRNA:   3'- -CGGCGgUGC-UCCaCaa--GUUGCGG-GCC- -5'
29374 3' -57.2 NC_006151.1 + 130960 0.67 0.833712
Target:  5'- cGCgGgCGCGGGGgccgGUacccCGGcCGCCCGGg -3'
miRNA:   3'- -CGgCgGUGCUCCa---CAa---GUU-GCGGGCC- -5'
29374 3' -57.2 NC_006151.1 + 130651 0.68 0.790977
Target:  5'- gGCCGCCuGCGGcGUGaacgUCAGUGCCCGcGg -3'
miRNA:   3'- -CGGCGG-UGCUcCACa---AGUUGCGGGC-C- -5'
29374 3' -57.2 NC_006151.1 + 130348 0.66 0.885991
Target:  5'- cGCCGCgGCGucGUGgUUGACGgCCGc -3'
miRNA:   3'- -CGGCGgUGCucCACaAGUUGCgGGCc -5'
29374 3' -57.2 NC_006151.1 + 129886 0.68 0.805943
Target:  5'- cGCCGCCACcucGGUcgcGUUCAgcacggcguacucgGCGUCCGa -3'
miRNA:   3'- -CGGCGGUGcu-CCA---CAAGU--------------UGCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.