miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 5' -52.7 NC_006151.1 + 51878 0.66 0.98339
Target:  5'- -uCCAGCuccagGUCGUCCaCGAC-UCGACa -3'
miRNA:   3'- cuGGUUG-----UAGCAGGaGCUGcAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 127572 0.66 0.981379
Target:  5'- cGCCGGCGccUCGUUCgccguccccgUCGGgGUCGACg -3'
miRNA:   3'- cUGGUUGU--AGCAGG----------AGCUgCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 65527 0.66 0.979192
Target:  5'- cGGCCAGCAgCGUcaugacggCCUCGugGcCGAa- -3'
miRNA:   3'- -CUGGUUGUaGCA--------GGAGCugCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 64215 0.66 0.979192
Target:  5'- -uCCGGCGUgGgcgCCUCGGCGUacagggccgCGACg -3'
miRNA:   3'- cuGGUUGUAgCa--GGAGCUGCA---------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 89233 0.66 0.97682
Target:  5'- cGCCGcccccguuggGCGUCGUgucgagcgCCgUCGugGUCGACg -3'
miRNA:   3'- cUGGU----------UGUAGCA--------GG-AGCugCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 58368 0.66 0.97682
Target:  5'- cGCC-GCGUCGUgaUCUCGACGgagagcgCGGCg -3'
miRNA:   3'- cUGGuUGUAGCA--GGAGCUGCa------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 37385 0.66 0.974255
Target:  5'- cGGCCGACGgccgCGUCCgcuacggCGGCGcCGGg- -3'
miRNA:   3'- -CUGGUUGUa---GCAGGa------GCUGCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 139934 0.66 0.974255
Target:  5'- cGCCGugGgccgcCGUCCUCGAguUCGGCg -3'
miRNA:   3'- cUGGUugUa----GCAGGAGCUgcAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 114852 0.66 0.974255
Target:  5'- cGACCAcguagGCGggGUCCUCGGCcagGUCG-CUg -3'
miRNA:   3'- -CUGGU-----UGUagCAGGAGCUG---CAGCuGA- -5'
29374 5' -52.7 NC_006151.1 + 79249 0.66 0.97149
Target:  5'- aGACac-CAUCGUCC-CGGCGcggucUCGACg -3'
miRNA:   3'- -CUGguuGUAGCAGGaGCUGC-----AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 111656 0.66 0.97149
Target:  5'- cGGCCGugAUCGcggCCaggggGGCGUCGGCg -3'
miRNA:   3'- -CUGGUugUAGCa--GGag---CUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 93803 0.67 0.968517
Target:  5'- aGGCCGAgGUUGgauggCCUCGuCG-CGGCUg -3'
miRNA:   3'- -CUGGUUgUAGCa----GGAGCuGCaGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 96287 0.67 0.968208
Target:  5'- gGGCCAgguACAUC-UCCUCGuacuugaGCGcCGACUg -3'
miRNA:   3'- -CUGGU---UGUAGcAGGAGC-------UGCaGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 4821 0.67 0.967584
Target:  5'- uGGCgGACGUCGUCCUCGucccagagccccucGCGggagucccCGGCg -3'
miRNA:   3'- -CUGgUUGUAGCAGGAGC--------------UGCa-------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 122891 0.67 0.966631
Target:  5'- gGGCCAACcgCGacgcccucgagcgccUCCUCGAgGgcggCGACg -3'
miRNA:   3'- -CUGGUUGuaGC---------------AGGAGCUgCa---GCUGa -5'
29374 5' -52.7 NC_006151.1 + 135282 0.67 0.96533
Target:  5'- --aCGAgGUCGUCCgugUCcGCGUCGACg -3'
miRNA:   3'- cugGUUgUAGCAGG---AGcUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59417 0.67 0.96533
Target:  5'- cGAgCAGCAgCGgcgCCagcUCGGCGUCGGCc -3'
miRNA:   3'- -CUgGUUGUaGCa--GG---AGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 96662 0.67 0.96533
Target:  5'- gGGCCcgGGCGaCGUCCUCGgggcaggcgGCGUCGAg- -3'
miRNA:   3'- -CUGG--UUGUaGCAGGAGC---------UGCAGCUga -5'
29374 5' -52.7 NC_006151.1 + 59810 0.67 0.96533
Target:  5'- uGGCCAccucGCcgCuGUCCgCGAUGUCGGCc -3'
miRNA:   3'- -CUGGU----UGuaG-CAGGaGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 125487 0.67 0.965
Target:  5'- cGGCCAGCG-CGU-CUCGGCGcgcaugcUCGGCg -3'
miRNA:   3'- -CUGGUUGUaGCAgGAGCUGC-------AGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.