miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 81860 0.68 0.940162
Target:  5'- aGGCgcGCGUCGCUCucgacgcgcaGGAGCGccGGCGCc -3'
miRNA:   3'- gCUGa-UGCAGCGGG----------UCUUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 84018 0.68 0.940162
Target:  5'- gGGgUGCGcCGCCCcGAcuGCGUGuGCGUg -3'
miRNA:   3'- gCUgAUGCaGCGGGuCU--UGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 134618 0.68 0.940162
Target:  5'- gGGCcagcGCGUgGCCCAGcugguGC-UGACGCg -3'
miRNA:   3'- gCUGa---UGCAgCGGGUCu----UGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 128161 0.68 0.937294
Target:  5'- aGGCUGCG-CGCgauggcguaguugaaCCAGGcgaGCGUGcCGCg -3'
miRNA:   3'- gCUGAUGCaGCG---------------GGUCU---UGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 129574 0.68 0.936808
Target:  5'- uGACgGCGUCGCgcugcucCCAGAacuccgcgagcgggcACGUG-CGCa -3'
miRNA:   3'- gCUGaUGCAGCG-------GGUCU---------------UGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 10517 0.68 0.935335
Target:  5'- aGGC-GCGUC-CCCGGcGCG-GGCGCc -3'
miRNA:   3'- gCUGaUGCAGcGGGUCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 49670 0.68 0.935335
Target:  5'- gGGC--CG-CGCCCGGAggACGcgGACGCg -3'
miRNA:   3'- gCUGauGCaGCGGGUCU--UGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 120768 0.68 0.935335
Target:  5'- uGGgUGCGgCGCCCGcuGGCG-GACGCg -3'
miRNA:   3'- gCUgAUGCaGCGGGUc-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122494 0.68 0.935335
Target:  5'- gGGCgagACGgCGCgCCGGcGCGcgGACGCg -3'
miRNA:   3'- gCUGa--UGCaGCG-GGUCuUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 129849 0.68 0.935335
Target:  5'- gCGAC-ACGgccugGCCCAGGccCGUGGCGUc -3'
miRNA:   3'- -GCUGaUGCag---CGGGUCUu-GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 48831 0.68 0.935335
Target:  5'- cCGAgUucgACGUgGCCCccu-CGUGGCGCg -3'
miRNA:   3'- -GCUgA---UGCAgCGGGucuuGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 59377 0.68 0.935335
Target:  5'- gCGGCcguCGUCGCguCCAGcACGUGGCa- -3'
miRNA:   3'- -GCUGau-GCAGCG--GGUCuUGCACUGcg -5'
29375 3' -53.5 NC_006151.1 + 78552 0.68 0.935335
Target:  5'- cCGACgACGaagcaCGCCCGGGAg--GACGCg -3'
miRNA:   3'- -GCUGaUGCa----GCGGGUCUUgcaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 97663 0.68 0.930267
Target:  5'- --cCUG-GUCGCCgCGGGccacgcACGUGACGCu -3'
miRNA:   3'- gcuGAUgCAGCGG-GUCU------UGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 129773 0.68 0.930267
Target:  5'- gCGACgaggGCGUCGCUCccgccGGCGUGGgccCGCa -3'
miRNA:   3'- -GCUGa---UGCAGCGGGuc---UUGCACU---GCG- -5'
29375 3' -53.5 NC_006151.1 + 139743 0.68 0.930267
Target:  5'- gCGACaggagGCGgaUCGUCCGGAcgGCGggcccGACGCg -3'
miRNA:   3'- -GCUGa----UGC--AGCGGGUCU--UGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 74563 0.68 0.929747
Target:  5'- gGGCUG-GUUGCCCAGcggguccccgggcAGCGUGAacuCGCc -3'
miRNA:   3'- gCUGAUgCAGCGGGUC-------------UUGCACU---GCG- -5'
29375 3' -53.5 NC_006151.1 + 102523 0.68 0.924959
Target:  5'- cCGGCgGCGUCuacgaCCAGacgGugGUGGCGCg -3'
miRNA:   3'- -GCUGaUGCAGcg---GGUC---UugCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 90427 0.68 0.924959
Target:  5'- gCGACgagcaCGCCCAucAGCGUGAUGCa -3'
miRNA:   3'- -GCUGaugcaGCGGGUc-UUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 52613 0.68 0.924959
Target:  5'- aGGCguCGUCGCgCAGGACG-GcCGCg -3'
miRNA:   3'- gCUGauGCAGCGgGUCUUGCaCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.