miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 87039 0.67 0.957106
Target:  5'- aCGACUA---CGCCCAGGACa--ACGCg -3'
miRNA:   3'- -GCUGAUgcaGCGGGUCUUGcacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 128811 0.67 0.957106
Target:  5'- gCGGCgcGCGUgGCCCcGuACGcGGCGCu -3'
miRNA:   3'- -GCUGa-UGCAgCGGGuCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 3996 0.67 0.957106
Target:  5'- gCGGCcACGUUGgCCGGGGCGaagagGGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGCgGGUCUUGCa----CU-GCG- -5'
29375 3' -53.5 NC_006151.1 + 138668 0.67 0.957106
Target:  5'- aCGGCcaucUACGUgGCCCccAACGagacgGACGCg -3'
miRNA:   3'- -GCUG----AUGCAgCGGGucUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 139280 0.67 0.957106
Target:  5'- aCGGCggacGCGcCGCCCucGGCGUcugcGGCGCg -3'
miRNA:   3'- -GCUGa---UGCaGCGGGucUUGCA----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 34589 0.67 0.953219
Target:  5'- cCGGCUGgGgCGCCCucGGAGCGc-GCGCc -3'
miRNA:   3'- -GCUGAUgCaGCGGG--UCUUGCacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 33938 0.67 0.949101
Target:  5'- aGGCccGCG-CGCCCcgggggcucGGGGCGgGACGCg -3'
miRNA:   3'- gCUGa-UGCaGCGGG---------UCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 87287 0.67 0.949101
Target:  5'- gGGCUgcacGCGcCGCCCcccucgccCGUGGCGCa -3'
miRNA:   3'- gCUGA----UGCaGCGGGucuu----GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 83575 0.67 0.949101
Target:  5'- uCGACcGCGg-GCCCgaAGAGCGggaccaGGCGCg -3'
miRNA:   3'- -GCUGaUGCagCGGG--UCUUGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 134428 0.67 0.949101
Target:  5'- -uGCUGCcccccgggggCGCCgAGAcCGUGACGCu -3'
miRNA:   3'- gcUGAUGca--------GCGGgUCUuGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 127841 0.67 0.948677
Target:  5'- uGGCgGCGUCGCggcugcgCCGGAGgG-GGCGCc -3'
miRNA:   3'- gCUGaUGCAGCG-------GGUCUUgCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 2279 0.67 0.94475
Target:  5'- aCGGCcgGCGgggCGCCCGcGGCGgcgacGGCGCc -3'
miRNA:   3'- -GCUGa-UGCa--GCGGGUcUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 100227 0.67 0.94475
Target:  5'- gGGCgcCGUgGCCgAGcgcGugGUGGCGCu -3'
miRNA:   3'- gCUGauGCAgCGGgUC---UugCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 20979 0.67 0.94475
Target:  5'- gGGC-GCGUCGCCgGGcACGaggacGGCGCu -3'
miRNA:   3'- gCUGaUGCAGCGGgUCuUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 82360 0.67 0.94475
Target:  5'- gGugUACGUgCGCC--GGACGccgGGCGCg -3'
miRNA:   3'- gCugAUGCA-GCGGguCUUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 84831 0.67 0.94475
Target:  5'- gGGCcGCGaggugcagaUCGCCaAGAacgACGUGGCGCu -3'
miRNA:   3'- gCUGaUGC---------AGCGGgUCU---UGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 136448 0.67 0.94475
Target:  5'- -cGCUACGUCGaCgAGcGCGUG-CGCg -3'
miRNA:   3'- gcUGAUGCAGCgGgUCuUGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 84346 0.67 0.94475
Target:  5'- cCGAgUACGUCgccgGCCCGcGGCgGUGAuCGCg -3'
miRNA:   3'- -GCUgAUGCAG----CGGGUcUUG-CACU-GCG- -5'
29375 3' -53.5 NC_006151.1 + 84018 0.68 0.940162
Target:  5'- gGGgUGCGcCGCCCcGAcuGCGUGuGCGUg -3'
miRNA:   3'- gCUgAUGCaGCGGGuCU--UGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 81860 0.68 0.940162
Target:  5'- aGGCgcGCGUCGCUCucgacgcgcaGGAGCGccGGCGCc -3'
miRNA:   3'- gCUGa-UGCAGCGGG----------UCUUGCa-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.