miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 20979 0.67 0.94475
Target:  5'- gGGC-GCGUCGCCgGGcACGaggacGGCGCu -3'
miRNA:   3'- gCUGaUGCAGCGGgUCuUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 100227 0.67 0.94475
Target:  5'- gGGCgcCGUgGCCgAGcgcGugGUGGCGCu -3'
miRNA:   3'- gCUGauGCAgCGGgUC---UugCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 2279 0.67 0.94475
Target:  5'- aCGGCcgGCGgggCGCCCGcGGCGgcgacGGCGCc -3'
miRNA:   3'- -GCUGa-UGCa--GCGGGUcUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 34589 0.67 0.953219
Target:  5'- cCGGCUGgGgCGCCCucGGAGCGc-GCGCc -3'
miRNA:   3'- -GCUGAUgCaGCGGG--UCUUGCacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 4200 0.67 0.957106
Target:  5'- aGGCagGCGg-GCCCgAGGGCGgccggGGCGCg -3'
miRNA:   3'- gCUGa-UGCagCGGG-UCUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 78218 0.67 0.957106
Target:  5'- gGGCUccACGUCGCUC---ACG-GGCGCg -3'
miRNA:   3'- gCUGA--UGCAGCGGGucuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 118195 0.67 0.960767
Target:  5'- cCGGCUucgccgggcACGUgGCCguGGugGcgGGCGCc -3'
miRNA:   3'- -GCUGA---------UGCAgCGGguCUugCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 50608 0.67 0.960767
Target:  5'- gGGCcccGCGcCGCCgCGGcAGCGUGcACGCc -3'
miRNA:   3'- gCUGa--UGCaGCGG-GUC-UUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 120368 0.67 0.960767
Target:  5'- gCGcCUACcagCGCCCGGAcACGgccgugGACGUg -3'
miRNA:   3'- -GCuGAUGca-GCGGGUCU-UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 99313 0.67 0.960767
Target:  5'- gGACcGCG-CGCCCcGccuGACG-GACGCg -3'
miRNA:   3'- gCUGaUGCaGCGGGuC---UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 74603 0.67 0.960767
Target:  5'- cCGAUga-GgCGCCgCAGGGCGUGcACGUg -3'
miRNA:   3'- -GCUGaugCaGCGG-GUCUUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 90732 0.67 0.960767
Target:  5'- gCGACggugGCGgcggCGCCCucgGGGGCGgcgggcacgGugGCg -3'
miRNA:   3'- -GCUGa---UGCa---GCGGG---UCUUGCa--------CugCG- -5'
29375 3' -53.5 NC_006151.1 + 59883 0.67 0.960767
Target:  5'- uGGCUgGCGaaggCGUCCAGGcgcGCGUcGCGCa -3'
miRNA:   3'- gCUGA-UGCa---GCGGGUCU---UGCAcUGCG- -5'
29375 3' -53.5 NC_006151.1 + 139280 0.67 0.957106
Target:  5'- aCGGCggacGCGcCGCCCucGGCGUcugcGGCGCg -3'
miRNA:   3'- -GCUGa---UGCaGCGGGucUUGCA----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138668 0.67 0.957106
Target:  5'- aCGGCcaucUACGUgGCCCccAACGagacgGACGCg -3'
miRNA:   3'- -GCUG----AUGCAgCGGGucUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 3996 0.67 0.957106
Target:  5'- gCGGCcACGUUGgCCGGGGCGaagagGGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGCgGGUCUUGCa----CU-GCG- -5'
29375 3' -53.5 NC_006151.1 + 128811 0.67 0.957106
Target:  5'- gCGGCgcGCGUgGCCCcGuACGcGGCGCu -3'
miRNA:   3'- -GCUGa-UGCAgCGGGuCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 87039 0.67 0.957106
Target:  5'- aCGACUA---CGCCCAGGACa--ACGCg -3'
miRNA:   3'- -GCUGAUgcaGCGGGUCUUGcacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 84018 0.68 0.940162
Target:  5'- gGGgUGCGcCGCCCcGAcuGCGUGuGCGUg -3'
miRNA:   3'- gCUgAUGCaGCGGGuCU--UGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 81860 0.68 0.940162
Target:  5'- aGGCgcGCGUCGCUCucgacgcgcaGGAGCGccGGCGCc -3'
miRNA:   3'- gCUGa-UGCAGCGGG----------UCUUGCa-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.