miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 65787 0.76 0.57138
Target:  5'- gCGGCgaugGCGcCGCCCGGcgcgGACGUGcCGCg -3'
miRNA:   3'- -GCUGa---UGCaGCGGGUC----UUGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 66557 0.69 0.888093
Target:  5'- gCGGCcGCGcCGCCguGGACccGGCGCu -3'
miRNA:   3'- -GCUGaUGCaGCGGguCUUGcaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 67535 0.68 0.91941
Target:  5'- aGGCgccagccgGCGUCGUugaCCAccACGUGGCGCc -3'
miRNA:   3'- gCUGa-------UGCAGCG---GGUcuUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 68098 0.78 0.427181
Target:  5'- aGGCUcGCGUCGCCCA--GCGUcaGGCGCa -3'
miRNA:   3'- gCUGA-UGCAGCGGGUcuUGCA--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 69331 0.68 0.913621
Target:  5'- gGGCgcguCGcCGCCCGcGAGCGcGGCGUa -3'
miRNA:   3'- gCUGau--GCaGCGGGU-CUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 70900 0.66 0.970439
Target:  5'- -cGCUGCGUCGUgCGcuGCcUGGCGCg -3'
miRNA:   3'- gcUGAUGCAGCGgGUcuUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 72160 0.66 0.970439
Target:  5'- aGGCacuCGUCGCCgAGcAGCGgcggGACGa -3'
miRNA:   3'- gCUGau-GCAGCGGgUC-UUGCa---CUGCg -5'
29375 3' -53.5 NC_006151.1 + 73020 0.76 0.561259
Target:  5'- -cGCUGCGagGCCCAGGgauugGCGgUGGCGCg -3'
miRNA:   3'- gcUGAUGCagCGGGUCU-----UGC-ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 73803 0.66 0.975854
Target:  5'- uCGGCgcccACGUcgcgcauggCGCCgAGGugGUcGGCGCa -3'
miRNA:   3'- -GCUGa---UGCA---------GCGGgUCUugCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 74563 0.68 0.929747
Target:  5'- gGGCUG-GUUGCCCAGcggguccccgggcAGCGUGAacuCGCc -3'
miRNA:   3'- gCUGAUgCAGCGGGUC-------------UUGCACU---GCG- -5'
29375 3' -53.5 NC_006151.1 + 74603 0.67 0.960767
Target:  5'- cCGAUga-GgCGCCgCAGGGCGUGcACGUg -3'
miRNA:   3'- -GCUGaugCaGCGG-GUCUUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 75137 0.7 0.858937
Target:  5'- cCGGCgGCG-CgGCCCAGcGCG-GGCGCa -3'
miRNA:   3'- -GCUGaUGCaG-CGGGUCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 76793 0.66 0.973246
Target:  5'- uCGGCgcCGUacagCGCCCcggcgAGGGCG-GGCGCg -3'
miRNA:   3'- -GCUGauGCA----GCGGG-----UCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 77503 0.7 0.858937
Target:  5'- -aACUACGUgCGCaCGGAGC-UGGCGCg -3'
miRNA:   3'- gcUGAUGCA-GCGgGUCUUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 77884 0.66 0.967428
Target:  5'- cCGGCgUGCGcccccCGCUCAGcGGCGaGACGCg -3'
miRNA:   3'- -GCUG-AUGCa----GCGGGUC-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 78218 0.67 0.957106
Target:  5'- gGGCUccACGUCGCUC---ACG-GGCGCg -3'
miRNA:   3'- gCUGA--UGCAGCGGGucuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 78324 0.72 0.78198
Target:  5'- aGGCUggACGagCGcCCCGGGGCG-GGCGCg -3'
miRNA:   3'- gCUGA--UGCa-GC-GGGUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 78552 0.68 0.935335
Target:  5'- cCGACgACGaagcaCGCCCGGGAg--GACGCg -3'
miRNA:   3'- -GCUGaUGCa----GCGGGUCUUgcaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 81860 0.68 0.940162
Target:  5'- aGGCgcGCGUCGCUCucgacgcgcaGGAGCGccGGCGCc -3'
miRNA:   3'- gCUGa-UGCAGCGGG----------UCUUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 82360 0.67 0.94475
Target:  5'- gGugUACGUgCGCC--GGACGccgGGCGCg -3'
miRNA:   3'- gCugAUGCA-GCGGguCUUGCa--CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.