miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 48831 0.68 0.935335
Target:  5'- cCGAgUucgACGUgGCCCccu-CGUGGCGCg -3'
miRNA:   3'- -GCUgA---UGCAgCGGGucuuGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 49670 0.68 0.935335
Target:  5'- gGGC--CG-CGCCCGGAggACGcgGACGCg -3'
miRNA:   3'- gCUGauGCaGCGGGUCU--UGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 50608 0.67 0.960767
Target:  5'- gGGCcccGCGcCGCCgCGGcAGCGUGcACGCc -3'
miRNA:   3'- gCUGa--UGCaGCGG-GUC-UUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 52613 0.68 0.924959
Target:  5'- aGGCguCGUCGCgCAGGACG-GcCGCg -3'
miRNA:   3'- gCUGauGCAGCGgGUCUUGCaCuGCG- -5'
29375 3' -53.5 NC_006151.1 + 53758 0.74 0.653314
Target:  5'- uCGAgUACGcCGCCgAGAGCuUGGCGUa -3'
miRNA:   3'- -GCUgAUGCaGCGGgUCUUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 54363 0.76 0.541172
Target:  5'- aCGAggACGUgGCCCGGGACuggaUGGCGCa -3'
miRNA:   3'- -GCUgaUGCAgCGGGUCUUGc---ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 54585 0.66 0.965521
Target:  5'- uCGACUggaucgugugccucgGCGUgGuCCCGGuGCGccgGGCGCg -3'
miRNA:   3'- -GCUGA---------------UGCAgC-GGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 57158 0.74 0.632772
Target:  5'- gGGCgaggGCGUCccccggcgcgGCCCAGAAgucgggguCGUGGCGCg -3'
miRNA:   3'- gCUGa---UGCAG----------CGGGUCUU--------GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 57549 0.66 0.970439
Target:  5'- gGGC-ACGUCGCcgagcacgccCCAGAagccguccuugACGUaGGCGCa -3'
miRNA:   3'- gCUGaUGCAGCG----------GGUCU-----------UGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 57641 0.69 0.894826
Target:  5'- aGACccCGUUGgCCAGcGCGaUGACGCu -3'
miRNA:   3'- gCUGauGCAGCgGGUCuUGC-ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 59161 0.68 0.91941
Target:  5'- aGGCcgGCGUCGCgCAGcAGCGcGGCGa -3'
miRNA:   3'- gCUGa-UGCAGCGgGUC-UUGCaCUGCg -5'
29375 3' -53.5 NC_006151.1 + 59377 0.68 0.935335
Target:  5'- gCGGCcguCGUCGCguCCAGcACGUGGCa- -3'
miRNA:   3'- -GCUGau-GCAGCG--GGUCuUGCACUGcg -5'
29375 3' -53.5 NC_006151.1 + 59883 0.67 0.960767
Target:  5'- uGGCUgGCGaaggCGUCCAGGcgcGCGUcGCGCa -3'
miRNA:   3'- gCUGA-UGCa---GCGGGUCU---UGCAcUGCG- -5'
29375 3' -53.5 NC_006151.1 + 61798 0.69 0.907592
Target:  5'- cCGGCUgGCGUUccaGCCCAGcGugGUGcucuACGCg -3'
miRNA:   3'- -GCUGA-UGCAG---CGGGUC-UugCAC----UGCG- -5'
29375 3' -53.5 NC_006151.1 + 63483 0.66 0.973246
Target:  5'- gCGGCgGCGgCGCCCgaAGAAgGUGGC-Ca -3'
miRNA:   3'- -GCUGaUGCaGCGGG--UCUUgCACUGcG- -5'
29375 3' -53.5 NC_006151.1 + 63547 0.7 0.869537
Target:  5'- gCGACcACGUagcucUGCaCCAGGaucugccgaaaguugGCGUGGCGCg -3'
miRNA:   3'- -GCUGaUGCA-----GCG-GGUCU---------------UGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63692 0.68 0.913621
Target:  5'- cCGACUggGCGUgCGCguucgCGGcGACGUGGCGCc -3'
miRNA:   3'- -GCUGA--UGCA-GCGg----GUC-UUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63933 0.69 0.907592
Target:  5'- gGGCUcGCGUCGUCCgccgAGAACagguacuUGGCGCg -3'
miRNA:   3'- gCUGA-UGCAGCGGG----UCUUGc------ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 64615 0.66 0.967428
Target:  5'- gCGGCgccGCGcCGCCggccgCGGGGCGcGGCGCc -3'
miRNA:   3'- -GCUGa--UGCaGCGG-----GUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 65728 0.68 0.940162
Target:  5'- gCGGCUGCGcgCgGCCCAGGAgcCGgGAgGCc -3'
miRNA:   3'- -GCUGAUGCa-G-CGGGUCUU--GCaCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.