miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 28871 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 28590 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 106674 0.66 0.975854
Target:  5'- aGGCcGCGgCGCUCGGcGCGccgGGCGCc -3'
miRNA:   3'- gCUGaUGCaGCGGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 137507 0.66 0.975602
Target:  5'- cCGACUuugGCGcCGCgCCGGGcgacgaggacuggGCGgacuggGACGCg -3'
miRNA:   3'- -GCUGA---UGCaGCG-GGUCU-------------UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 5850 0.66 0.975348
Target:  5'- aGGCUGCGgagggggacgagCGCCCGGGGCcgccgGGgGCc -3'
miRNA:   3'- gCUGAUGCa-----------GCGGGUCUUGca---CUgCG- -5'
29375 3' -53.5 NC_006151.1 + 72160 0.66 0.970439
Target:  5'- aGGCacuCGUCGCCgAGcAGCGgcggGACGa -3'
miRNA:   3'- gCUGau-GCAGCGGgUC-UUGCa---CUGCg -5'
29375 3' -53.5 NC_006151.1 + 94048 0.66 0.970439
Target:  5'- gCGcCgcgGCGUCGCCgCGGAACaGcaucagcuggaUGGCGCu -3'
miRNA:   3'- -GCuGa--UGCAGCGG-GUCUUG-C-----------ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 85013 0.66 0.972147
Target:  5'- uCGACUcgcgcgacggccgcAUGUCGCgCAccuucauGGGCGUGACGa -3'
miRNA:   3'- -GCUGA--------------UGCAGCGgGU-------CUUGCACUGCg -5'
29375 3' -53.5 NC_006151.1 + 10925 0.66 0.973246
Target:  5'- gGGCccACGgCGCCgAGggUG-GGCGCg -3'
miRNA:   3'- gCUGa-UGCaGCGGgUCuuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63483 0.66 0.973246
Target:  5'- gCGGCgGCGgCGCCCgaAGAAgGUGGC-Ca -3'
miRNA:   3'- -GCUGaUGCaGCGGG--UCUUgCACUGcG- -5'
29375 3' -53.5 NC_006151.1 + 76793 0.66 0.973246
Target:  5'- uCGGCgcCGUacagCGCCCcggcgAGGGCG-GGCGCg -3'
miRNA:   3'- -GCUGauGCA----GCGGG-----UCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138668 0.67 0.957106
Target:  5'- aCGGCcaucUACGUgGCCCccAACGagacgGACGCg -3'
miRNA:   3'- -GCUG----AUGCAgCGGGucUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 139280 0.67 0.957106
Target:  5'- aCGGCggacGCGcCGCCCucGGCGUcugcGGCGCg -3'
miRNA:   3'- -GCUGa---UGCaGCGGGucUUGCA----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 59883 0.67 0.960767
Target:  5'- uGGCUgGCGaaggCGUCCAGGcgcGCGUcGCGCa -3'
miRNA:   3'- gCUGA-UGCa---GCGGGUCU---UGCAcUGCG- -5'
29375 3' -53.5 NC_006151.1 + 90732 0.67 0.960767
Target:  5'- gCGACggugGCGgcggCGCCCucgGGGGCGgcgggcacgGugGCg -3'
miRNA:   3'- -GCUGa---UGCa---GCGGG---UCUUGCa--------CugCG- -5'
29375 3' -53.5 NC_006151.1 + 74603 0.67 0.960767
Target:  5'- cCGAUga-GgCGCCgCAGGGCGUGcACGUg -3'
miRNA:   3'- -GCUGaugCaGCGG-GUCUUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 99313 0.67 0.960767
Target:  5'- gGACcGCG-CGCCCcGccuGACG-GACGCg -3'
miRNA:   3'- gCUGaUGCaGCGGGuC---UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 120368 0.67 0.960767
Target:  5'- gCGcCUACcagCGCCCGGAcACGgccgugGACGUg -3'
miRNA:   3'- -GCuGAUGca-GCGGGUCU-UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 50608 0.67 0.960767
Target:  5'- gGGCcccGCGcCGCCgCGGcAGCGUGcACGCc -3'
miRNA:   3'- gCUGa--UGCaGCGG-GUC-UUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 3996 0.67 0.957106
Target:  5'- gCGGCcACGUUGgCCGGGGCGaagagGGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGCgGGUCUUGCa----CU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.