miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 89634 0.71 0.79935
Target:  5'- gCGugUGCG-CGCCCuugacggccaccgAGAG-GUGGCGCg -3'
miRNA:   3'- -GCugAUGCaGCGGG-------------UCUUgCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 104150 0.71 0.80025
Target:  5'- gCGGCUACGaCGCCgCGGAGC-UG-CGCc -3'
miRNA:   3'- -GCUGAUGCaGCGG-GUCUUGcACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 102686 0.71 0.80916
Target:  5'- gGAC-GCGggggCGCCCGGcGCGggcGGCGCg -3'
miRNA:   3'- gCUGaUGCa---GCGGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 130398 0.71 0.80916
Target:  5'- aGGCcaGCGccUCGCCCGcGAGCGcgGGCGCg -3'
miRNA:   3'- gCUGa-UGC--AGCGGGU-CUUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 103851 0.71 0.80916
Target:  5'- gCGGCUGCG-CGCgCAGcccGACGagggGACGCu -3'
miRNA:   3'- -GCUGAUGCaGCGgGUC---UUGCa---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138357 0.71 0.817907
Target:  5'- cCGGCccgcaccuuCGUgGCCCuGAGCGUcGACGCc -3'
miRNA:   3'- -GCUGau-------GCAgCGGGuCUUGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 101543 0.71 0.817907
Target:  5'- uGGC-GCGccugCGCCCGGcgGACGUGuACGCg -3'
miRNA:   3'- gCUGaUGCa---GCGGGUC--UUGCAC-UGCG- -5'
29375 3' -53.5 NC_006151.1 + 86528 0.71 0.826485
Target:  5'- gGugUACGacgccUCGCCCgAGGccgcCGUGGCGCc -3'
miRNA:   3'- gCugAUGC-----AGCGGG-UCUu---GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 135402 0.7 0.843097
Target:  5'- aGGCcguCGUCG-CCGGAGgccuCGUGGCGCg -3'
miRNA:   3'- gCUGau-GCAGCgGGUCUU----GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 17036 0.7 0.851117
Target:  5'- cCGGCgACGaucaCGUCCAGGGCGUcGGCGUc -3'
miRNA:   3'- -GCUGaUGCa---GCGGGUCUUGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 114920 0.7 0.851117
Target:  5'- aCGGCcccgGCGUCGCgcucggccuCCGGggUG-GGCGCg -3'
miRNA:   3'- -GCUGa---UGCAGCG---------GGUCuuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 75137 0.7 0.858937
Target:  5'- cCGGCgGCG-CgGCCCAGcGCG-GGCGCa -3'
miRNA:   3'- -GCUGaUGCaG-CGGGUCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 118735 0.7 0.858937
Target:  5'- aCGGCUACGUgcuggGCCCGGcggcCGUGccACGCg -3'
miRNA:   3'- -GCUGAUGCAg----CGGGUCuu--GCAC--UGCG- -5'
29375 3' -53.5 NC_006151.1 + 28075 0.7 0.858937
Target:  5'- cCGACgucaccguCGUCGUCCGGGcguccucgaGCGgGGCGCg -3'
miRNA:   3'- -GCUGau------GCAGCGGGUCU---------UGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 77503 0.7 0.858937
Target:  5'- -aACUACGUgCGCaCGGAGC-UGGCGCg -3'
miRNA:   3'- gcUGAUGCA-GCGgGUCUUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 134740 0.7 0.866551
Target:  5'- gGACUuuGUCGCCCcGAGCagcGCGCg -3'
miRNA:   3'- gCUGAugCAGCGGGuCUUGcacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 98342 0.7 0.866551
Target:  5'- gGGCcGCGagaCGCCCGcGGGCGUG-CGCg -3'
miRNA:   3'- gCUGaUGCa--GCGGGU-CUUGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 130659 0.7 0.866551
Target:  5'- gCGGCgugaACGUCaguGCCCgcGGGGCGcGGCGCa -3'
miRNA:   3'- -GCUGa---UGCAG---CGGG--UCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63547 0.7 0.869537
Target:  5'- gCGACcACGUagcucUGCaCCAGGaucugccgaaaguugGCGUGGCGCg -3'
miRNA:   3'- -GCUGaUGCA-----GCG-GGUCU---------------UGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 116968 0.69 0.881134
Target:  5'- uGACcuccACGUCGCU--GGACGUGAgGCg -3'
miRNA:   3'- gCUGa---UGCAGCGGguCUUGCACUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.