miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 116968 0.69 0.881134
Target:  5'- uGACcuccACGUCGCU--GGACGUGAgGCg -3'
miRNA:   3'- gCUGa---UGCAGCGGguCUUGCACUgCG- -5'
29375 3' -53.5 NC_006151.1 + 125476 0.69 0.881134
Target:  5'- aCGGCcGCGcUCGgCCAGcGCGUcucGGCGCg -3'
miRNA:   3'- -GCUGaUGC-AGCgGGUCuUGCA---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 66557 0.69 0.888093
Target:  5'- gCGGCcGCGcCGCCguGGACccGGCGCu -3'
miRNA:   3'- -GCUGaUGCaGCGGguCUUGcaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 17553 0.69 0.888093
Target:  5'- cCGGgUGCGccUCGCCCAcGAagGCGggGAUGCg -3'
miRNA:   3'- -GCUgAUGC--AGCGGGU-CU--UGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 374 0.69 0.888093
Target:  5'- uGACcGCuUC-CCCGG-ACGUGACGCc -3'
miRNA:   3'- gCUGaUGcAGcGGGUCuUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 84755 0.69 0.888093
Target:  5'- aCGGCgcGCGcCGCCgAGGAgGcgGACGCg -3'
miRNA:   3'- -GCUGa-UGCaGCGGgUCUUgCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 106750 0.69 0.894826
Target:  5'- gGGCU-CGcCGCCgAGcAGCGcGACGCg -3'
miRNA:   3'- gCUGAuGCaGCGGgUC-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 57641 0.69 0.894826
Target:  5'- aGACccCGUUGgCCAGcGCGaUGACGCu -3'
miRNA:   3'- gCUGauGCAGCgGGUCuUGC-ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 18292 0.69 0.901326
Target:  5'- gGAaccagACGUCGaagCCGGAGCGgGGCGCc -3'
miRNA:   3'- gCUga---UGCAGCg--GGUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 90955 0.69 0.901326
Target:  5'- gGGCUcCGUCGCgCC-GAccGCGUcGACGCc -3'
miRNA:   3'- gCUGAuGCAGCG-GGuCU--UGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 84239 0.69 0.903861
Target:  5'- gGugUuCGUgGCCCagcGGAgcaugcgcgugcucgACGUGACGCg -3'
miRNA:   3'- gCugAuGCAgCGGG---UCU---------------UGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 61798 0.69 0.907592
Target:  5'- cCGGCUgGCGUUccaGCCCAGcGugGUGcucuACGCg -3'
miRNA:   3'- -GCUGA-UGCAG---CGGGUC-UugCAC----UGCG- -5'
29375 3' -53.5 NC_006151.1 + 122945 0.69 0.907592
Target:  5'- cCGACgGCGgCGCCgCGGGggGCGcgGACGCc -3'
miRNA:   3'- -GCUGaUGCaGCGG-GUCU--UGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63933 0.69 0.907592
Target:  5'- gGGCUcGCGUCGUCCgccgAGAACagguacuUGGCGCg -3'
miRNA:   3'- gCUGA-UGCAGCGGG----UCUUGc------ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 69331 0.68 0.913621
Target:  5'- gGGCgcguCGcCGCCCGcGAGCGcGGCGUa -3'
miRNA:   3'- gCUGau--GCaGCGGGU-CUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 122462 0.68 0.913621
Target:  5'- aCGGCggcgGCGggCGCCgAGGcCGggGACGCg -3'
miRNA:   3'- -GCUGa---UGCa-GCGGgUCUuGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 96205 0.68 0.913621
Target:  5'- gGGCgccGCGUCGCCguGGcggcggccgcgGCGaGGCGCa -3'
miRNA:   3'- gCUGa--UGCAGCGGguCU-----------UGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138821 0.68 0.913621
Target:  5'- uCGugUACGcgCGCCaGGAGCG--GCGCa -3'
miRNA:   3'- -GCugAUGCa-GCGGgUCUUGCacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 63692 0.68 0.913621
Target:  5'- cCGACUggGCGUgCGCguucgCGGcGACGUGGCGCc -3'
miRNA:   3'- -GCUGA--UGCA-GCGg----GUC-UUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 59161 0.68 0.91941
Target:  5'- aGGCcgGCGUCGCgCAGcAGCGcGGCGa -3'
miRNA:   3'- gCUGa-UGCAGCGgGUC-UUGCaCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.