miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 106674 0.66 0.975854
Target:  5'- aGGCcGCGgCGCUCGGcGCGccgGGCGCc -3'
miRNA:   3'- gCUGaUGCaGCGGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 28590 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 28871 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 73803 0.66 0.975854
Target:  5'- uCGGCgcccACGUcgcgcauggCGCCgAGGugGUcGGCGCa -3'
miRNA:   3'- -GCUGa---UGCA---------GCGGgUCUugCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 135159 0.66 0.975854
Target:  5'- cCGGCggGCG-CgGCCCGGA-CG-GGCGCc -3'
miRNA:   3'- -GCUGa-UGCaG-CGGGUCUuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 70900 0.66 0.970439
Target:  5'- -cGCUGCGUCGUgCGcuGCcUGGCGCg -3'
miRNA:   3'- gcUGAUGCAGCGgGUcuUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 57549 0.66 0.970439
Target:  5'- gGGC-ACGUCGCcgagcacgccCCAGAagccguccuugACGUaGGCGCa -3'
miRNA:   3'- gCUGaUGCAGCG----------GGUCU-----------UGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 95218 0.66 0.964206
Target:  5'- gCGGCUGCGccgcaCGCCCucGAcCGaGGCGCc -3'
miRNA:   3'- -GCUGAUGCa----GCGGGu-CUuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 129420 0.66 0.964206
Target:  5'- uCGGCgaggucgACGUCcgGCCCcaaguGGGCGgGGCGCa -3'
miRNA:   3'- -GCUGa------UGCAG--CGGGu----CUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 106202 0.66 0.964206
Target:  5'- cCGGCggUGCGgcUCGCCCuccccgaccuGAugGUGGcCGCg -3'
miRNA:   3'- -GCUG--AUGC--AGCGGGu---------CUugCACU-GCG- -5'
29375 3' -53.5 NC_006151.1 + 54585 0.66 0.965521
Target:  5'- uCGACUggaucgugugccucgGCGUgGuCCCGGuGCGccgGGCGCg -3'
miRNA:   3'- -GCUGA---------------UGCAgC-GGGUCuUGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 86122 0.66 0.965521
Target:  5'- cCGGCUACcUgGCCCuguacgauaGGGACGgcggggagcucgcgcUGACGCg -3'
miRNA:   3'- -GCUGAUGcAgCGGG---------UCUUGC---------------ACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 27408 0.66 0.966484
Target:  5'- gGGCUcguaccaGUCgGCCCAGAcccgguccaugggcGCGgcgGACGCg -3'
miRNA:   3'- gCUGAug-----CAG-CGGGUCU--------------UGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 141712 0.66 0.966801
Target:  5'- gGACgcggugcccgggGCGUUaauaCCCAGGGCGgaggGGCGCg -3'
miRNA:   3'- gCUGa-----------UGCAGc---GGGUCUUGCa---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 97708 0.66 0.967428
Target:  5'- gCGuC-ACGUgGCCCAGGagccccccgaggACGUGcaGCGCg -3'
miRNA:   3'- -GCuGaUGCAgCGGGUCU------------UGCAC--UGCG- -5'
29375 3' -53.5 NC_006151.1 + 3915 0.66 0.967428
Target:  5'- gGGCUGC-UCgGgCCAGAGCGggggcaggccgGGCGCg -3'
miRNA:   3'- gCUGAUGcAG-CgGGUCUUGCa----------CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 64615 0.66 0.967428
Target:  5'- gCGGCgccGCGcCGCCggccgCGGGGCGcGGCGCc -3'
miRNA:   3'- -GCUGa--UGCaGCGG-----GUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 77884 0.66 0.967428
Target:  5'- cCGGCgUGCGcccccCGCUCAGcGGCGaGACGCg -3'
miRNA:   3'- -GCUG-AUGCa----GCGGGUC-UUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 91169 0.66 0.970439
Target:  5'- aGGCUcACGUcgggCGCCCgcgaggGGAGCaUGAUGCa -3'
miRNA:   3'- gCUGA-UGCA----GCGGG------UCUUGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 98013 0.66 0.970439
Target:  5'- aGGCgGCGcCGgCCAGGuccgcgGgGUGGCGCa -3'
miRNA:   3'- gCUGaUGCaGCgGGUCU------UgCACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.