miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 374 0.69 0.888093
Target:  5'- uGACcGCuUC-CCCGG-ACGUGACGCc -3'
miRNA:   3'- gCUGaUGcAGcGGGUCuUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 2279 0.67 0.94475
Target:  5'- aCGGCcgGCGgggCGCCCGcGGCGgcgacGGCGCc -3'
miRNA:   3'- -GCUGa-UGCa--GCGGGUcUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 3915 0.66 0.967428
Target:  5'- gGGCUGC-UCgGgCCAGAGCGggggcaggccgGGCGCg -3'
miRNA:   3'- gCUGAUGcAG-CgGGUCUUGCa----------CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 3996 0.67 0.957106
Target:  5'- gCGGCcACGUUGgCCGGGGCGaagagGGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGCgGGUCUUGCa----CU-GCG- -5'
29375 3' -53.5 NC_006151.1 + 4200 0.67 0.957106
Target:  5'- aGGCagGCGg-GCCCgAGGGCGgccggGGCGCg -3'
miRNA:   3'- gCUGa-UGCagCGGG-UCUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 5850 0.66 0.975348
Target:  5'- aGGCUGCGgagggggacgagCGCCCGGGGCcgccgGGgGCc -3'
miRNA:   3'- gCUGAUGCa-----------GCGGGUCUUGca---CUgCG- -5'
29375 3' -53.5 NC_006151.1 + 10517 0.68 0.935335
Target:  5'- aGGC-GCGUC-CCCGGcGCG-GGCGCc -3'
miRNA:   3'- gCUGaUGCAGcGGGUCuUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 10925 0.66 0.973246
Target:  5'- gGGCccACGgCGCCgAGggUG-GGCGCg -3'
miRNA:   3'- gCUGa-UGCaGCGGgUCuuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 17036 0.7 0.851117
Target:  5'- cCGGCgACGaucaCGUCCAGGGCGUcGGCGUc -3'
miRNA:   3'- -GCUGaUGCa---GCGGGUCUUGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 17553 0.69 0.888093
Target:  5'- cCGGgUGCGccUCGCCCAcGAagGCGggGAUGCg -3'
miRNA:   3'- -GCUgAUGC--AGCGGGU-CU--UGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 18292 0.69 0.901326
Target:  5'- gGAaccagACGUCGaagCCGGAGCGgGGCGCc -3'
miRNA:   3'- gCUga---UGCAGCg--GGUCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 20979 0.67 0.94475
Target:  5'- gGGC-GCGUCGCCgGGcACGaggacGGCGCu -3'
miRNA:   3'- gCUGaUGCAGCGGgUCuUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 27408 0.66 0.966484
Target:  5'- gGGCUcguaccaGUCgGCCCAGAcccgguccaugggcGCGgcgGACGCg -3'
miRNA:   3'- gCUGAug-----CAG-CGGGUCU--------------UGCa--CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 28075 0.7 0.858937
Target:  5'- cCGACgucaccguCGUCGUCCGGGcguccucgaGCGgGGCGCg -3'
miRNA:   3'- -GCUGau------GCAGCGGGUCU---------UGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 28590 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 28871 0.66 0.975854
Target:  5'- cCGGC-GCGUC-CCCGGAggcGgGUGcCGCg -3'
miRNA:   3'- -GCUGaUGCAGcGGGUCU---UgCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 33938 0.67 0.949101
Target:  5'- aGGCccGCG-CGCCCcgggggcucGGGGCGgGACGCg -3'
miRNA:   3'- gCUGa-UGCaGCGGG---------UCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 34589 0.67 0.953219
Target:  5'- cCGGCUGgGgCGCCCucGGAGCGc-GCGCc -3'
miRNA:   3'- -GCUGAUgCaGCGGG--UCUUGCacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 36857 0.73 0.734094
Target:  5'- gGACUcgGCcUCGCCgGGGACGgcggGGCGCc -3'
miRNA:   3'- gCUGA--UGcAGCGGgUCUUGCa---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 38159 0.71 0.791187
Target:  5'- gGACUcugucgcccuCGUCGCCCGcacCGUGGCGCc -3'
miRNA:   3'- gCUGAu---------GCAGCGGGUcuuGCACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.