miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 3' -53.5 NC_006151.1 + 141712 0.66 0.966801
Target:  5'- gGACgcggugcccgggGCGUUaauaCCCAGGGCGgaggGGCGCg -3'
miRNA:   3'- gCUGa-----------UGCAGc---GGGUCUUGCa---CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 140495 0.68 0.91941
Target:  5'- cCGGCUGCGacgCGCCCAccugccGCcUGACGUg -3'
miRNA:   3'- -GCUGAUGCa--GCGGGUcu----UGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 140285 0.68 0.921659
Target:  5'- uCGACgagcucgugcgccgGCGcCGCCUgcGGGACGUG-CGCu -3'
miRNA:   3'- -GCUGa-------------UGCaGCGGG--UCUUGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 139743 0.68 0.930267
Target:  5'- gCGACaggagGCGgaUCGUCCGGAcgGCGggcccGACGCg -3'
miRNA:   3'- -GCUGa----UGC--AGCGGGUCU--UGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 139280 0.67 0.957106
Target:  5'- aCGGCggacGCGcCGCCCucGGCGUcugcGGCGCg -3'
miRNA:   3'- -GCUGa---UGCaGCGGGucUUGCA----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138821 0.68 0.913621
Target:  5'- uCGugUACGcgCGCCaGGAGCG--GCGCa -3'
miRNA:   3'- -GCugAUGCa-GCGGgUCUUGCacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138668 0.67 0.957106
Target:  5'- aCGGCcaucUACGUgGCCCccAACGagacgGACGCg -3'
miRNA:   3'- -GCUG----AUGCAgCGGGucUUGCa----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 138357 0.71 0.817907
Target:  5'- cCGGCccgcaccuuCGUgGCCCuGAGCGUcGACGCc -3'
miRNA:   3'- -GCUGau-------GCAgCGGGuCUUGCA-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 137507 0.66 0.975602
Target:  5'- cCGACUuugGCGcCGCgCCGGGcgacgaggacuggGCGgacuggGACGCg -3'
miRNA:   3'- -GCUGA---UGCaGCG-GGUCU-------------UGCa-----CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 137459 0.66 0.963536
Target:  5'- cCGACgACGgccucgaggaggCGCCCuGGGACGacGACGCc -3'
miRNA:   3'- -GCUGaUGCa-----------GCGGG-UCUUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 136722 1.02 0.01682
Target:  5'- gCGAC-ACGUCGCCCAGAACGUGACGCc -3'
miRNA:   3'- -GCUGaUGCAGCGGGUCUUGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 136448 0.67 0.94475
Target:  5'- -cGCUACGUCGaCgAGcGCGUG-CGCg -3'
miRNA:   3'- gcUGAUGCAGCgGgUCuUGCACuGCG- -5'
29375 3' -53.5 NC_006151.1 + 135402 0.7 0.843097
Target:  5'- aGGCcguCGUCG-CCGGAGgccuCGUGGCGCg -3'
miRNA:   3'- gCUGau-GCAGCgGGUCUU----GCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 135159 0.66 0.975854
Target:  5'- cCGGCggGCG-CgGCCCGGA-CG-GGCGCc -3'
miRNA:   3'- -GCUGa-UGCaG-CGGGUCUuGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 134740 0.7 0.866551
Target:  5'- gGACUuuGUCGCCCcGAGCagcGCGCg -3'
miRNA:   3'- gCUGAugCAGCGGGuCUUGcacUGCG- -5'
29375 3' -53.5 NC_006151.1 + 134618 0.68 0.940162
Target:  5'- gGGCcagcGCGUgGCCCAGcugguGC-UGACGCg -3'
miRNA:   3'- gCUGa---UGCAgCGGGUCu----UGcACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 134428 0.67 0.949101
Target:  5'- -uGCUGCcccccgggggCGCCgAGAcCGUGACGCu -3'
miRNA:   3'- gcUGAUGca--------GCGGgUCUuGCACUGCG- -5'
29375 3' -53.5 NC_006151.1 + 130659 0.7 0.866551
Target:  5'- gCGGCgugaACGUCaguGCCCgcGGGGCGcGGCGCa -3'
miRNA:   3'- -GCUGa---UGCAG---CGGG--UCUUGCaCUGCG- -5'
29375 3' -53.5 NC_006151.1 + 130398 0.71 0.80916
Target:  5'- aGGCcaGCGccUCGCCCGcGAGCGcgGGCGCg -3'
miRNA:   3'- gCUGa-UGC--AGCGGGU-CUUGCa-CUGCG- -5'
29375 3' -53.5 NC_006151.1 + 129849 0.68 0.935335
Target:  5'- gCGAC-ACGgccugGCCCAGGccCGUGGCGUc -3'
miRNA:   3'- -GCUGaUGCag---CGGGUCUu-GCACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.